WormBase Tree Display for Gene: WBGene00011539

WBGene00011539 SMap: S_parent: Sequence: T06E6
  Identity: Version: 4
    Name: CGC_name: fbxa-135 Person_evidence: WBPerson655
      Sequence_name: T06E6.5
      Molecular_name: T06E6.5
        T06E6.5.1
        CE46354
      Other_name: fbxa-132
        CELE_T06E6.5 Accession_evidence: NDB BX284605
      Public_name: fbxa-135
    DB_info: Database: AceView gene 5P883
        WormQTL gene WBGene00011539
        WormFlux gene WBGene00011539
        NDB locus_tag CELE_T06E6.5
        Panther gene CAEEL|WormBase=WBGene00011539|UniProtKB=O62361
          family PTHR23014
        NCBI gene 188184
        RefSeq protein NM_074428.5
        TrEMBL UniProtAcc O62361
        UniProt_GCRP UniProtAcc O62361
    Species: Caenorhabditis elegans
    History: Version_change: 1 26 May 2004 16:54:52 WBPerson1971 Event: Imported: Initial conversion from CDS class of WS125
        2 12 Dec 2005 15:18:56 WBPerson2970 Name_change: CGC_name: fbxa-135
        3 21 Dec 2005 10:59:36 WBPerson1983 Event: Split_into: WBGene00044656
        4 15 Aug 2011 11:59:07 WBPerson4025 Event: Acquires_merge: WBGene00044656
      Acquires_merge: WBGene00044656
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: fbxa
    Allele (40)
    RNASeq_FPKM (74)
    Ortholog (21)
    Paralog (176)
    Structured_description: Concise_description: This gene encodes a protein containing an F-box, a motif predicted to mediate protein-protein interactions either with homologs of yeast Skp-1p or with other proteins; this gene's encoded protein also contains an FTH/DUF38 motif, which may also mediate protein-protein interaction. Paper_evidence: WBPaper00012854
          Curator_confirmed: WBPerson567
          Date_last_updated: 17 Jun 2004 00:00:00
      Automated_description: Enriched in DA neuron; VA neuron; intestine; neurons; and pharyngeal muscle cell based on tiling array; single-cell RNA-seq; and RNA-seq studies. Is affected by several genes including daf-16; daf-2; and skn-1 based on microarray; tiling array; and RNA-seq studies. Is affected by nine chemicals including Sodium Chloride; Psoralens; and allantoin based on RNA-seq and microarray studies. Is predicted to encode a protein with the following domains: F-box domain; Domain of unknown function DUF38/FTH, Caenorhabditis species; and FTH domain. Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: T06E6.5
    Corresponding_CDS_history: T06E6.5:wp150
      T06E6.5:wp227
    Corresponding_transcript: T06E6.5.1
    Associated_feature: WBsf647594
  Experimental_info: RNAi_result: WBRNAi00018311 Inferred_automatically: RNAi_primary
      WBRNAi00052670 Inferred_automatically: RNAi_primary
    Expr_pattern: Expr1025243
      Expr1156275
      Expr2011470
      Expr2029709
    Microarray_results (15)
    Expression_cluster (182)
    Interaction: WBInteraction000184779
      WBInteraction000348008
      WBInteraction000409826
      WBInteraction000575558
  Map_info: Map: V Position: 8.04221 Error: 0.00209
    Positive: Positive_clone: T06E6 Inferred_automatically: From sequence, transcript, pseudogene data
    Pseudo_map_position
  Reference: WBPaper00012854
  Remark: Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. CGC_data_submission
  Method: Gene