WormBase Tree Display for Gene: WBGene00011563
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| WBGene00011563 | SMap | S_parent | Sequence | T07C4 | ||||||
|---|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 3 | ||||||||
| Name | CGC_name | jmjd-4 | Person_evidence | WBPerson260 | ||||||
| Sequence_name | T07C4.11 | |||||||||
| Molecular_name | T07C4.11a | |||||||||
| T07C4.11a.1 | ||||||||||
| CE40266 | ||||||||||
| T07C4.11b | ||||||||||
| Other_name | CELE_T07C4.11 | Accession_evidence | NDB | BX284603 | ||||||
| Public_name | jmjd-4 | |||||||||
| DB_info | Database (11) | |||||||||
| Species | Caenorhabditis elegans | |||||||||
| History | Version_change | 1 | 26 May 2004 16:54:52 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of WS125 | |||
| 2 | 30 Sep 2011 16:40:15 | WBPerson2970 | Name_change | CGC_name | jmjd-4 | |||||
| 3 | 19 May 2006 13:33:26 | WBPerson1983 | Event | Split_into | WBGene00044891 | |||||
| Changed_class | Transcript | CDS | ||||||||
| Split_into | WBGene00044891 | |||||||||
| Status | Live | |||||||||
| Gene_info | Biotype | SO:0001217 | ||||||||
| Gene_class | jmjd | |||||||||
| Allele (14) | ||||||||||
| RNASeq_FPKM (74) | ||||||||||
| GO_annotation | 00057535 | |||||||||
| 00057536 | ||||||||||
| 00057537 | ||||||||||
| 00057538 | ||||||||||
| 00057539 | ||||||||||
| Contained_in_operon | CEOP3844 | |||||||||
| CEOP5619 | ||||||||||
| Ortholog (30) | ||||||||||
| Paralog | WBGene00004205 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | ||||||||||
| WBGene00043156 | Caenorhabditis elegans | From_analysis | Panther | |||||||
| WormBase-Compara | ||||||||||
| Structured_description | Automated_description | Predicted to enable 2-oxoglutarate-dependent dioxygenase activity and sequence-specific DNA binding activity. Predicted to be involved in positive regulation of translational termination. Predicted to be located in cytoplasm and nucleus. Is an ortholog of human JMJD4 (jumonji domain containing 4). | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | |||||||||
| WBPerson37462 | ||||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | |||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | |||||||||
| Molecular_info | Corresponding_CDS | T07C4.11a | ||||||||
| Corresponding_CDS_history | T07C4.11:wp130 | |||||||||
| Corresponding_transcript | T07C4.11b | |||||||||
| T07C4.11a.1 | ||||||||||
| Corresponding_transcript_history | T07C4.11:wp159 | |||||||||
| Other_sequence | Dviv_isotig23830 | |||||||||
| HCC04936_1 | ||||||||||
| Tcol_isotig13751 | ||||||||||
| JI169117.1 | ||||||||||
| HC07679 | ||||||||||
| Associated_feature | WBsf651454 | |||||||||
| WBsf993976 | ||||||||||
| WBsf1015770 | ||||||||||
| Experimental_info | RNAi_result | WBRNAi00002598 | Inferred_automatically | RNAi_primary | ||||||
| WBRNAi00052730 | Inferred_automatically | RNAi_primary | ||||||||
| Expr_pattern | Expr1022037 | |||||||||
| Expr1035098 | ||||||||||
| Expr1156333 | ||||||||||
| Expr2012891 | ||||||||||
| Expr2031125 | ||||||||||
| Drives_construct | WBCnstr00030557 | |||||||||
| Construct_product | WBCnstr00030557 | |||||||||
| Microarray_results (14) | ||||||||||
| Expression_cluster (48) | ||||||||||
| Interaction | WBInteraction000521425 | |||||||||
| Map_info | Map | III | Position | 2.32244 | Error | 0.000606 | ||||
| Positive | Positive_clone | T07C4 | Inferred_automatically | From sequence, transcript, pseudogene data | ||||||
| Pseudo_map_position | ||||||||||
| Reference | WBPaper00038491 | |||||||||
| WBPaper00045092 | ||||||||||
| WBPaper00055090 | ||||||||||
| WBPaper00065308 | ||||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | ||||||||
| Method | Gene |
