WormBase Tree Display for Gene: WBGene00011887
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WBGene00011887 | SMap | S_parent | Sequence | T21B10 | |||
---|---|---|---|---|---|---|---|
Identity (6) | |||||||
Gene_info | Biotype | SO:0001217 | |||||
Gene_class | set | ||||||
Allele (16) | |||||||
Strain | WBStrain00027569 | ||||||
WBStrain00027619 | |||||||
RNASeq_FPKM (74) | |||||||
GO_annotation | 00002215 | ||||||
00002216 | |||||||
00002217 | |||||||
00002218 | |||||||
00002219 | |||||||
00002220 | |||||||
00002221 | |||||||
00002222 | |||||||
00002223 | |||||||
00002224 | |||||||
Ortholog (27) | |||||||
Structured_description | Concise_description | set-17 encodes a SET domain-containing protein orthologous to human PRDM11 and PRDM7 (Q9NQW5-2; OMIM:609759); SET-17 is expressed in many or all cells of embryo, and several postembryonic tissues (hypodermis, muscle, and excretory cell); neither set-17(n5017) nor set-17(RNAi) have any obvious phenotypes. | Paper_evidence | WBPaper00030864 | |||
Curator_confirmed | WBPerson567 | ||||||
Date_last_updated | 11 Oct 2007 00:00:00 | ||||||
Automated_description | Enables histone H3K4 methyltransferase activity. Predicted to be involved in chromatin remodeling and methylation. Predicted to be located in nucleus. Expressed in several structures, including body wall musculature; excretory cell; intestine; primary spermatocyte; and vulval muscle. Is an ortholog of human PRDM7 (PR/SET domain 7). | Paper_evidence | WBPaper00065943 | ||||
Curator_confirmed | WBPerson324 | ||||||
WBPerson37462 | |||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||
Date_last_updated | 29 Nov 2023 00:00:00 | ||||||
Molecular_info | Corresponding_CDS | T21B10.5a | |||||
T21B10.5b | |||||||
Corresponding_transcript | T21B10.5a.1 | ||||||
T21B10.5b.1 | |||||||
Other_sequence (24) | |||||||
Associated_feature | WBsf650381 | ||||||
WBsf223569 | |||||||
WBsf223570 | |||||||
WBsf223571 | |||||||
Transcription_factor | WBTranscriptionFactor000278 | ||||||
Experimental_info | RNAi_result | WBRNAi00115778 | Inferred_automatically | RNAi_primary | |||
WBRNAi00089590 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00091482 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00018944 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00113451 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00089620 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00053688 | Inferred_automatically | RNAi_primary | |||||
Expr_pattern (11) | |||||||
Drives_construct | WBCnstr00038649 | ||||||
Construct_product | WBCnstr00038649 | ||||||
Microarray_results (27) | |||||||
Expression_cluster (100) | |||||||
Interaction (23) | |||||||
Map_info | Map | II | Position | 0.935542 | Error | 0.000773 | |
Positive | Positive_clone | T21B10 | Inferred_automatically | From sequence, transcript, pseudogene data | |||
Pseudo_map_position | |||||||
Reference (15) | |||||||
Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||
Method | Gene |