WormBase Tree Display for Gene: WBGene00011897
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| WBGene00011897 | SMap | S_parent | Sequence | T21C9 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 2 | |||||||
| Name | CGC_name | scpl-4 | Person_evidence | WBPerson56 | |||||
| Sequence_name | T21C9.12 | ||||||||
| Molecular_name | T21C9.12a | ||||||||
| T21C9.12a.1 | |||||||||
| CE06481 | |||||||||
| T21C9.12b | |||||||||
| CE53110 | |||||||||
| T21C9.12b.1 | |||||||||
| Other_name | CELE_T21C9.12 | Accession_evidence | NDB | BX284605 | |||||
| Public_name | scpl-4 | ||||||||
| DB_info | Database (11) | ||||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 26 May 2004 16:54:53 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of WS125 | ||
| 2 | 02 Feb 2007 10:20:45 | WBPerson2970 | Name_change | CGC_name | scpl-4 | ||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | scpl | ||||||||
| Allele (35) | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation (11) | |||||||||
| Contained_in_operon | CEOP5530 | ||||||||
| Ortholog (38) | |||||||||
| Paralog | WBGene00007054 | Caenorhabditis elegans | From_analysis | Panther | |||||
| WormBase-Compara | |||||||||
| WBGene00018474 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| WBGene00021629 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| Structured_description | Concise_description | scpl-4 encodes an ortholog of budding yeast TIM50 and human TIMM50(OMIM:607381); by orthology, SCPL-4 is expected to be part of themitochondrial inner membrane protein translocase; SCPL-4 is required forembryonic development and fertility in mass RNAi assays; SCPL-4 isdistantly similar to FCP-1 and SCPL-1, -2, and -3. | Paper_evidence | WBPaper00024497 | |||||
| WBPaper00025054 | |||||||||
| WBPaper00029275 | |||||||||
| WBPaper00029276 | |||||||||
| Curator_confirmed | WBPerson567 | ||||||||
| Date_last_updated | 25 Apr 2007 00:00:00 | ||||||||
| Automated_description | Predicted to be involved in protein import into mitochondrial matrix. Predicted to be located in mitochondrial inner membrane. Predicted to be part of TIM23 mitochondrial import inner membrane translocase complex. Human ortholog(s) of this gene implicated in 3-methylglutaconic aciduria type 9. Is an ortholog of human TIMM50 (translocase of inner mitochondrial membrane 50). | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Disease_info | Potential_model | DOID:0070002 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:23656) | ||||
| Molecular_info | Corresponding_CDS | T21C9.12a | |||||||
| T21C9.12b | |||||||||
| Corresponding_transcript | T21C9.12a.1 | ||||||||
| T21C9.12b.1 | |||||||||
| Other_sequence (33) | |||||||||
| Associated_feature | WBsf647179 | ||||||||
| WBsf661646 | |||||||||
| WBsf661647 | |||||||||
| WBsf232403 | |||||||||
| WBsf232404 | |||||||||
| Experimental_info | RNAi_result | WBRNAi00093682 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00053716 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00110746 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00106908 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00035750 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00095734 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr1021209 | ||||||||
| Expr1035246 | |||||||||
| Expr1157266 | |||||||||
| Expr2015649 | |||||||||
| Expr2033881 | |||||||||
| Drives_construct | WBCnstr00030301 | ||||||||
| Construct_product | WBCnstr00030301 | ||||||||
| Antibody | WBAntibody00003018 | ||||||||
| Microarray_results (21) | |||||||||
| Expression_cluster (122) | |||||||||
| Interaction (48) | |||||||||
| Map_info | Map | V | Position | 2.60665 | Error | 0.00121 | |||
| Positive | Positive_clone | T21C9 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00029277 | ||||||||
| WBPaper00031595 | |||||||||
| WBPaper00038491 | |||||||||
| WBPaper00049490 | |||||||||
| WBPaper00049828 | |||||||||
| WBPaper00055090 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
