WormBase Tree Display for Gene: WBGene00012320
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WBGene00012320 | SMap | S_parent | Sequence | W07A8 | ||||||
---|---|---|---|---|---|---|---|---|---|---|
Identity | Version | 3 | ||||||||
Name | CGC_name | srxa-3 | Person_evidence | WBPerson522 | ||||||
Sequence_name | W07A8.4 | |||||||||
Molecular_name | W07A8.4 | |||||||||
Other_name | CELE_W07A8.4 | Accession_evidence | NDB | BX284605 | ||||||
Public_name | srxa-3 | |||||||||
DB_info | Database | AceView | gene | 5V205 | ||||||
WormQTL | gene | WBGene00012320 | ||||||||
NDB | locus_tag | CELE_W07A8.4 | ||||||||
NCBI | gene | 13218913 | ||||||||
Species | Caenorhabditis elegans | |||||||||
History | Version_change | 1 | 26 May 2004 16:54:53 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of WS125 | |||
2 | 18 Feb 2005 15:37:03 | WBPerson1983 | Event | Changed_class | CDS | Pseudogene | ||||
3 | 02 Mar 2005 17:12:51 | WBPerson2970 | Name_change | CGC_name | srxa-3 | |||||
Status | Live | |||||||||
Gene_info | Biotype | SO:0000336 | ||||||||
Gene_class | srxa | |||||||||
Allele (31) | ||||||||||
Strain | WBStrain00003214 | |||||||||
RNASeq_FPKM (74) | ||||||||||
Paralog | WBGene00010153 | Caenorhabditis elegans | From_analysis | modENCODE_Pseudogenes | ||||||
Structured_description | Automated_description | Enriched in sensory neurons based on RNA-seq studies. Is affected by dpy-21 and acs-3 based on RNA-seq and microarray studies. Is affected by Ethanol based on RNA-seq studies. | Paper_evidence | WBPaper00065943 | ||||||
Curator_confirmed | WBPerson324 | |||||||||
WBPerson37462 | ||||||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | |||||||||
Date_last_updated | 29 Nov 2023 00:00:00 | |||||||||
Molecular_info | Corresponding_CDS_history | W07A8.4:wp140 | ||||||||
Corresponding_pseudogene | W07A8.4 | |||||||||
Experimental_info | Expr_pattern | Expr6849 | ||||||||
Drives_construct | WBCnstr00003689 | |||||||||
Microarray_results | SMD_W07A8.4 | |||||||||
179399_at | ||||||||||
A_12_P113335 | ||||||||||
Aff_W07A8.4 | ||||||||||
GPL19516_CGZ0038692 | ||||||||||
GPL21109_W07A8.4 | ||||||||||
GPL3518_CE20160 | ||||||||||
GPL9450_W07A8.4 | ||||||||||
cea2.i.45909 | ||||||||||
Expression_cluster | WBPaper00041954:ethanol_upregulated | |||||||||
WBPaper00050370:dpy-21(e428)_L3_downregulated | ||||||||||
WBPaper00050726:OsmoticStress_regulated_Food | ||||||||||
WBPaper00050726:OsmoticStress_regulated_NoFood | ||||||||||
WBPaper00059598:HeatShock_upregulated | ||||||||||
WBPaper00060661:sensory-neuron_enriched | ||||||||||
WBPaper00061527:srj-42-srw-113 | ||||||||||
WBPaper00045015:acs-3(ft5)_downregulated | ||||||||||
Map_info | Map | V | Position | 25.0375 | Error | 0.000417 | ||||
Positive | Positive_clone | W07A8 | Inferred_automatically | From sequence, transcript, pseudogene data | ||||||
Pseudo_map_position | ||||||||||
Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | ||||||||
Method | Gene |