WormBase Tree Display for Gene: WBGene00012389
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| WBGene00012389 | SMap | S_parent | Sequence | CHROMOSOME_I | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 3 | |||||||
| Name | CGC_name | scpr-1 | Person_evidence | WBPerson24358 | |||||
| WBPerson6723 | |||||||||
| Sequence_name | Y6B3B.4 | ||||||||
| Molecular_name | Y6B3B.4 | ||||||||
| Y6B3B.4.1 | |||||||||
| CE54025 | |||||||||
| Other_name | CELE_Y6B3B.4 | Accession_evidence | NDB | BX284601 | |||||
| Public_name | scpr-1 | ||||||||
| DB_info | Database | AceView | gene | 1O357 | |||||
| WormQTL | gene | WBGene00012389 | |||||||
| WormFlux | gene | WBGene00012389 | |||||||
| NDB | locus_tag | CELE_Y6B3B.4 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00012389|UniProtKB=G5EGE8 | |||||||
| family | PTHR31434 | ||||||||
| NCBI | gene | 189368 | |||||||
| RefSeq | protein | NM_001377673.2 | |||||||
| TREEFAM | TREEFAM_ID | TF322287 | |||||||
| TrEMBL | UniProtAcc | G5EGE8 | |||||||
| UniProt_GCRP | UniProtAcc | G5EGE8 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 26 May 2004 16:54:53 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of WS125 | ||
| 2 | 22 Dec 2008 13:30:21 | WBPerson1983 | Event | Acquires_merge | WBGene00044110 | ||||
| 3 | 12 Jan 2023 20:48:33 | WBPerson51134 | Name_change | CGC_name | scpr-1 | ||||
| Acquires_merge | WBGene00044110 | ||||||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | scpr | ||||||||
| Allele (195) | |||||||||
| RNASeq_FPKM (74) | |||||||||
| Contained_in_operon | CEOP1933 | ||||||||
| Ortholog (38) | |||||||||
| Structured_description | Automated_description | Enriched in AFD; AVK; arcade cell; and germ line based on RNA-seq and single-cell RNA-seq studies. Is affected by several genes including hsf-1; eat-2; and sek-1 based on microarray; RNA-seq; and proteomic studies. Is affected by seven chemicals including rotenone; Alovudine; and Sirolimus based on RNA-seq and microarray studies. Is predicted to encode a protein with the following domains: S phase cyclin A-associated protein in the endoplasmic reticulum, N-terminal and S phase cyclin A-associated protein in the endoplasmic reticulum. Is an ortholog of human SCAPER (S-phase cyclin A associated protein in the ER). | Paper_evidence | WBPaper00065943 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | Y6B3B.4 | |||||||
| Corresponding_CDS_history | Y6B3B.4:wp180 | ||||||||
| Y6B3B.4:wp198 | |||||||||
| Y6B3B.4:wp274 | |||||||||
| Corresponding_transcript | Y6B3B.4.1 | ||||||||
| Other_sequence | CRC01232_1 | ||||||||
| JI463143.1 | |||||||||
| JI481496.1 | |||||||||
| Dviv_isotig33969 | |||||||||
| CR07366 | |||||||||
| DN557644.1 | |||||||||
| CR03922 | |||||||||
| CRC02942_1 | |||||||||
| MH08008 | |||||||||
| Oden_isotig04890 | |||||||||
| Associated_feature | WBsf643817 | ||||||||
| WBsf985938 | |||||||||
| WBsf1011112 | |||||||||
| WBsf1011113 | |||||||||
| Experimental_info | RNAi_result | WBRNAi00058092 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00004782 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00116997 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr1029109 | ||||||||
| Expr1035490 | |||||||||
| Expr1161505 | |||||||||
| Expr2008245 | |||||||||
| Expr2026488 | |||||||||
| Microarray_results (30) | |||||||||
| Expression_cluster (68) | |||||||||
| Interaction | WBInteraction000049248 | ||||||||
| WBInteraction000185201 | |||||||||
| WBInteraction000201653 | |||||||||
| WBInteraction000305436 | |||||||||
| WBInteraction000379417 | |||||||||
| WBInteraction000543063 | |||||||||
| Map_info | Map | I | Position | 21.6577 | |||||
| Positive | Positive_clone | Y6B3B | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00038491 | ||||||||
| WBPaper00055090 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
