WormBase Tree Display for Gene: WBGene00012491
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| WBGene00012491 | SMap | S_parent | Sequence | CHROMOSOME_V | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 1 | |||||||
| Name | Sequence_name | Y20C6A.1 | |||||||
| Molecular_name | Y20C6A.1a | ||||||||
| Y20C6A.1a.1 | |||||||||
| CE37058 | |||||||||
| Y20C6A.1b | |||||||||
| CE45116 | |||||||||
| Y20C6A.1b.1 | |||||||||
| Other_name | CELE_Y20C6A.1 | Accession_evidence | NDB | BX284605 | |||||
| Public_name | Y20C6A.1 | ||||||||
| DB_info | Database | AceView | gene | 5R852 | |||||
| WormQTL | gene | WBGene00012491 | |||||||
| WormFlux | gene | WBGene00012491 | |||||||
| NDB | locus_tag | CELE_Y20C6A.1 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00012491|UniProtKB=G5EFW4 | |||||||
| family | PTHR23014 | ||||||||
| NCBI | gene | 180151 | |||||||
| RefSeq | protein | NM_001269812.2 | |||||||
| NM_001269813.3 | |||||||||
| TREEFAM | TREEFAM_ID | TF322099 | |||||||
| TrEMBL | UniProtAcc | G5EDI6 | |||||||
| G5EFW4 | |||||||||
| UniProt_GCRP | UniProtAcc | G5EFW4 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 26 May 2004 16:54:53 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of WS125 | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Allele (187) | |||||||||
| RNASeq_FPKM (74) | |||||||||
| Ortholog (20) | |||||||||
| Paralog (179) | |||||||||
| Structured_description | Concise_description | This gene encodes a protein containing an F-box, a motif predicted to mediate protein-protein interactions either with homologs of yeast Skp-1p or with other proteins; this gene's encoded protein also contains an FTH/DUF38 motif, which may also mediate protein-protein interaction. | Paper_evidence | WBPaper00012854 | |||||
| Curator_confirmed | WBPerson567 | ||||||||
| Date_last_updated | 17 Jun 2004 00:00:00 | ||||||||
| Automated_description | Enriched in intestine based on RNA-seq studies. Is affected by several genes including daf-16; daf-2; and skn-1 based on microarray and RNA-seq studies. Is affected by six chemicals including Tunicamycin; levamisole; and bortezomib based on microarray and RNA-seq studies. Is predicted to encode a protein with the following domains: F-box domain; Domain of unknown function DUF38/FTH, Caenorhabditis species; and FTH domain. | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | Y20C6A.1a | |||||||
| Y20C6A.1b | |||||||||
| Corresponding_CDS_history | Y20C6A.1:wp92 | ||||||||
| Y20C6A.1:wp128 | |||||||||
| Corresponding_transcript | Y20C6A.1a.1 | ||||||||
| Y20C6A.1b.1 | |||||||||
| Other_sequence | BMC18441_1 | ||||||||
| JI253711.1 | |||||||||
| Tcir_isotig05522 | |||||||||
| OF00949 | |||||||||
| JI477487.1 | |||||||||
| BMC12076_2 | |||||||||
| Associated_feature | WBsf653512 | ||||||||
| WBsf653513 | |||||||||
| WBsf1002646 | |||||||||
| WBsf1002647 | |||||||||
| WBsf1021267 | |||||||||
| Experimental_info | RNAi_result | WBRNAi00055650 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00036709 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00020117 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr1012349 | ||||||||
| Expr1159177 | |||||||||
| Expr2007144 | |||||||||
| Expr2025376 | |||||||||
| Drives_construct | WBCnstr00029946 | ||||||||
| Construct_product | WBCnstr00029946 | ||||||||
| Microarray_results (15) | |||||||||
| Expression_cluster (132) | |||||||||
| Interaction (13) | |||||||||
| Map_info | Positive | Positive_clone | Y20C6A | Inferred_automatically | From sequence, transcript, pseudogene data | ||||
| Interpolated_map_position | V | 12.8917 | |||||||
| Reference | WBPaper00012854 | ||||||||
| Method | Gene |
