WormBase Tree Display for Gene: WBGene00012603
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| WBGene00012603 | SMap | S_parent | Sequence | Y38E10A | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 2 | |||||||
| Name | CGC_name | nspe-6 | Person_evidence | WBPerson1983 | |||||
| Sequence_name | Y38E10A.25 | ||||||||
| Molecular_name | Y38E10A.25 | ||||||||
| Y38E10A.25.1 | |||||||||
| CE35074 | |||||||||
| Other_name | CELE_Y38E10A.25 | Accession_evidence | NDB | BX284602 | |||||
| Public_name | nspe-6 | ||||||||
| DB_info | Database | AceView | gene | 2M906 | |||||
| WormQTL | gene | WBGene00012603 | |||||||
| WormFlux | gene | WBGene00012603 | |||||||
| NDB | locus_tag | CELE_Y38E10A.25 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00012603|UniProtKB=Q7YWR1 | |||||||
| family | PTHR34602 | ||||||||
| NCBI | gene | 3564817 | |||||||
| RefSeq | protein | NM_001027254.4 | |||||||
| TREEFAM | TREEFAM_ID | TF319947 | |||||||
| TrEMBL | UniProtAcc | Q7YWR1 | |||||||
| UniProt_GCRP | UniProtAcc | Q7YWR1 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 26 May 2004 16:54:54 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of WS125 | ||
| 2 | 19 Nov 2008 14:26:07 | WBPerson2970 | Name_change | CGC_name | nspe-6 | ||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | nspe | ||||||||
| Allele (14) | |||||||||
| RNASeq_FPKM (74) | |||||||||
| Ortholog (29) | |||||||||
| Paralog | WBGene00012587 | Caenorhabditis elegans | From_analysis | TreeFam | |||||
| Panther | |||||||||
| WormBase-Compara | |||||||||
| WBGene00012589 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
| Panther | |||||||||
| WormBase-Compara | |||||||||
| WBGene00012590 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
| Panther | |||||||||
| WormBase-Compara | |||||||||
| WBGene00012591 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
| Panther | |||||||||
| WormBase-Compara | |||||||||
| WBGene00012593 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
| Inparanoid_8 | |||||||||
| Panther | |||||||||
| WormBase-Compara | |||||||||
| WBGene00012594 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
| Inparanoid_8 | |||||||||
| Panther | |||||||||
| WormBase-Compara | |||||||||
| WBGene00175028 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| WBGene00012604 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
| Panther | |||||||||
| WormBase-Compara | |||||||||
| Structured_description | Automated_description | Enriched in arcade cell; pharyngeal-intestinal valve cell; and ventral nerve cord based on tiling array and RNA-seq studies. Is affected by several genes including daf-2; skn-1; and eat-2 based on microarray and RNA-seq studies. Is affected by seventeen chemicals including hydrogen sulfide; Tunicamycin; and 4-bromodiphenyl ether based on microarray and RNA-seq studies. Is predicted to encode a protein with the following domains: Protein of unknown function (DUF1412) and Protein of unknown function DUF1412. | Paper_evidence | WBPaper00065943 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | Y38E10A.25 | |||||||
| Corresponding_transcript | Y38E10A.25.1 | ||||||||
| Other_sequence | CSC01050_1 | ||||||||
| FD515044.1 | |||||||||
| FD516653.1 | |||||||||
| Associated_feature | WBsf650661 | ||||||||
| WBsf990150 | |||||||||
| WBsf990151 | |||||||||
| WBsf1013462 | |||||||||
| WBsf224084 | |||||||||
| Experimental_info | Expr_pattern | Expr1010896 | |||||||
| Expr1159543 | |||||||||
| Expr2014492 | |||||||||
| Expr2032731 | |||||||||
| Drives_construct | WBCnstr00029888 | ||||||||
| Construct_product | WBCnstr00029888 | ||||||||
| Microarray_results | A_12_P109614 | ||||||||
| GPL13394_WBGene00012603 | |||||||||
| GPL13914_Y38E10A.25 | |||||||||
| GPL14144_Y38E10A.25_89-148_0.937_1_A | |||||||||
| GPL19516_CGZ0044581 | |||||||||
| GPL21109_Y38E10A.25 | |||||||||
| GPL8304_CE_WBGene00012603_A | |||||||||
| GPL8673_Y38E10A_25P00046 | |||||||||
| GPL8673_Y38E10A_25P00052 | |||||||||
| GPL8673_Y38E10A_25P00114 | |||||||||
| Expression_cluster (101) | |||||||||
| Map_info | Map | II | Position | 10.4953 | |||||
| Positive | Positive_clone | Y38E10A | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
