WormBase Tree Display for Gene: WBGene00012606
expand all nodes | collapse all nodes | view schema
| WBGene00012606 | SMap | S_parent | Sequence | Y38F1A | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 1 | |||||||
| Name | Sequence_name | Y38F1A.2 | |||||||
| Molecular_name | Y38F1A.2 | ||||||||
| Y38F1A.2.1 | |||||||||
| CE21607 | |||||||||
| Other_name | CELE_Y38F1A.2 | Accession_evidence | NDB | BX284602 | |||||
| Public_name | Y38F1A.2 | ||||||||
| DB_info | Database (11) | ||||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 26 May 2004 16:54:54 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of WS125 | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Allele (82) | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00103658 | ||||||||
| 00103659 | |||||||||
| 00103660 | |||||||||
| 00105737 | |||||||||
| 00119662 | |||||||||
| Ortholog (44) | |||||||||
| Structured_description | Automated_description | Predicted to enable metal ion binding activity and ubiquitin protein ligase activity. Acts upstream of or within IRE1-mediated unfolded protein response. Predicted to be located in membrane. Human ortholog(s) of this gene implicated in autosomal dominant sensory ataxia 1 and hereditary spastic paraplegia 85. Is an ortholog of human RNF170 (ring finger protein 170). | Paper_evidence | WBPaper00065943 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Disease_info | Potential_model | DOID:0112345 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:25358) | ||||
| DOID:0111170 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:25358) | ||||||
| Molecular_info | Corresponding_CDS | Y38F1A.2 | |||||||
| Corresponding_transcript | Y38F1A.2.1 | ||||||||
| Other_sequence | HC01346 | ||||||||
| CBC04465_1 | |||||||||
| Hbac_isotig03270 | |||||||||
| CJC09386_1 | |||||||||
| CJC13180_1 | |||||||||
| Associated_feature (14) | |||||||||
| Experimental_info | RNAi_result | WBRNAi00036853 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00076771 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00056033 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr1022543 | ||||||||
| Expr1035574 | |||||||||
| Expr1159556 | |||||||||
| Expr2007311 | |||||||||
| Expr2025544 | |||||||||
| Microarray_results (21) | |||||||||
| Expression_cluster (95) | |||||||||
| Interaction | WBInteraction000278825 | ||||||||
| WBInteraction000548549 | |||||||||
| WBInteraction000555294 | |||||||||
| Map_info | Positive | Positive_clone | Y38F1A | Inferred_automatically | From sequence, transcript, pseudogene data | ||||
| Interpolated_map_position | II | 12.6926 | |||||||
| Reference | WBPaper00027315 | ||||||||
| WBPaper00029085 | |||||||||
| WBPaper00038491 | |||||||||
| WBPaper00055090 | |||||||||
| Method | Gene |
