WormBase Tree Display for Gene: WBGene00012802
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| WBGene00012802 | SMap | S_parent | Sequence | CHROMOSOME_III | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 3 | |||||||
| Name | CGC_name | set-25 | Person_evidence | WBPerson1730 | |||||
| WBPerson268 | |||||||||
| WBPerson632 | |||||||||
| Sequence_name | Y43F4B.3 | ||||||||
| Molecular_name | Y43F4B.3 | ||||||||
| Y43F4B.3.1 | |||||||||
| CE41469 | |||||||||
| Other_name | CELE_Y43F4B.3 | Accession_evidence | NDB | BX284603 | |||||
| Public_name | set-25 | ||||||||
| DB_info | Database (12) | ||||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 26 May 2004 16:54:54 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of WS125 | ||
| 2 | 03 May 2007 10:33:07 | WBPerson2970 | Name_change | CGC_name | set-25 | ||||
| 3 | 10 Jun 2014 12:12:12 | WBPerson1983 | Event | Acquires_merge | WBGene00012800 | ||||
| Acquires_merge | WBGene00012800 | ||||||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | set | ||||||||
| Allele (134) | |||||||||
| Strain | WBStrain00027579 | ||||||||
| WBStrain00050682 | |||||||||
| WBStrain00050691 | |||||||||
| WBStrain00050692 | |||||||||
| WBStrain00050680 | |||||||||
| WBStrain00051708 | |||||||||
| WBStrain00051705 | |||||||||
| WBStrain00051707 | |||||||||
| WBStrain00054548 | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation (15) | |||||||||
| Ortholog (66) | |||||||||
| Paralog (19) | |||||||||
| Structured_description | Concise_description | set-25 encodes a putative histone H3 lysine-9 methyltransferase, with a C-terminal SET domain but no obvious non-nematode orthologs; SET-25 is required both for normal axonal guidance during development, and for a normally low somatic mutation rate; set-25(RNAi) animals have defective DD/VD motoneuron commissures, and also display an elevated somatic mutation rate, but are otherwise normal. | Paper_evidence | WBPaper00005736 | |||||
| WBPaper00028984 | |||||||||
| WBPaper00030864 | |||||||||
| Curator_confirmed | WBPerson567 | ||||||||
| Date_last_updated | 11 Oct 2007 00:00:00 | ||||||||
| Automated_description | Enables histone H3K9 methyltransferase activity. Involved in negative regulation of gene expression, epigenetic. Part of heterochromatin. Expressed in hypodermis; intestine; muscle cell; and neurons. | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | Y43F4B.3 | |||||||
| Corresponding_CDS_history | Y43F4B.3:wp161 | ||||||||
| Y43F4B.3:wp179 | |||||||||
| Corresponding_transcript | Y43F4B.3.1 | ||||||||
| Other_sequence | CR07500 | ||||||||
| CJC17849_1 | |||||||||
| CRC02435_1 | |||||||||
| MH11240 | |||||||||
| Associated_feature (19) | |||||||||
| Experimental_info | RNAi_result (14) | ||||||||
| Expr_pattern | Expr10578 | ||||||||
| Expr14249 | |||||||||
| Expr14353 | |||||||||
| Expr16248 | |||||||||
| Expr1015985 | |||||||||
| Expr1035663 | |||||||||
| Expr1159958 | |||||||||
| Expr2015770 | |||||||||
| Expr2034003 | |||||||||
| Drives_construct | WBCnstr00017004 | ||||||||
| WBCnstr00029832 | |||||||||
| WBCnstr00042857 | |||||||||
| Construct_product | WBCnstr00017004 | ||||||||
| WBCnstr00022444 | |||||||||
| WBCnstr00029832 | |||||||||
| WBCnstr00042857 | |||||||||
| Regulate_expr_cluster | WBPaper00050193:met-2(n4256)set-25(n5021)_downregulated_L1 | ||||||||
| WBPaper00050193:met-2(n4256)set-25(n5021)_upregulated_L1 | |||||||||
| Microarray_results (32) | |||||||||
| Expression_cluster (127) | |||||||||
| Interaction (12) | |||||||||
| WBProcess | WBbiopr:00000135 | ||||||||
| Map_info | Map | III | Position | 21.203 | Error | 0.001426 | |||
| Positive | Positive_clone | Y43F4B | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Reference (58) | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| [140610 pad] Gene was missing Acquires_merge Event history data so inferred from Acquires_merge tag. | |||||||||
| Method | Gene |
