WormBase Tree Display for Gene: WBGene00012816
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| WBGene00012816 | SMap | S_parent | Sequence | Y43F8B | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 2 | |||||||
| Name | CGC_name | scl-21 | Person_evidence | WBPerson261 | |||||
| Sequence_name | Y43F8B.5 | ||||||||
| Molecular_name | Y43F8B.5 | ||||||||
| Y43F8B.5.1 | |||||||||
| CE21890 | |||||||||
| Other_name | CELE_Y43F8B.5 | Accession_evidence | NDB | BX284605 | |||||
| Public_name | scl-21 | ||||||||
| DB_info | Database | AceView | gene | 5T966 | |||||
| WormQTL | gene | WBGene00012816 | |||||||
| WormFlux | gene | WBGene00012816 | |||||||
| NDB | locus_tag | CELE_Y43F8B.5 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00012816|UniProtKB=Q9XWX3 | |||||||
| family | PTHR10334 | ||||||||
| NCBI | gene | 189870 | |||||||
| RefSeq | protein | NM_075392.1 | |||||||
| TREEFAM | TREEFAM_ID | TF352352 | |||||||
| TrEMBL | UniProtAcc | Q9XWX3 | |||||||
| UniProt_GCRP | UniProtAcc | Q9XWX3 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 26 May 2004 16:54:54 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of WS125 | ||
| 2 | 07 Nov 2007 11:51:23 | WBPerson2970 | Name_change | CGC_name | scl-21 | ||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | scl | ||||||||
| Allele (88) | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00103948 | ||||||||
| Ortholog (26) | |||||||||
| Paralog (32) | |||||||||
| Structured_description | Automated_description | Predicted to be located in extracellular space. Is an ortholog of human CLEC18A (C-type lectin domain family 18 member A); CLEC18B (C-type lectin domain family 18 member B); and CLEC18C (C-type lectin domain family 18 member C). | Paper_evidence | WBPaper00065943 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | Y43F8B.5 | |||||||
| Corresponding_transcript | Y43F8B.5.1 | ||||||||
| Associated_feature | WBsf718480 | ||||||||
| WBsf1003256 | |||||||||
| WBsf1003257 | |||||||||
| WBsf1003258 | |||||||||
| WBsf1021750 | |||||||||
| Experimental_info | RNAi_result | WBRNAi00020557 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00019948 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00056514 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr1017677 | ||||||||
| Expr1159988 | |||||||||
| Expr2015633 | |||||||||
| Expr2033868 | |||||||||
| Drives_construct | WBCnstr00029829 | ||||||||
| Construct_product | WBCnstr00029829 | ||||||||
| Microarray_results (17) | |||||||||
| Expression_cluster (50) | |||||||||
| Interaction (19) | |||||||||
| Map_info | Map | V | Position | 22.0329 | Error | 0.079894 | |||
| Positive | Positive_clone | Y43F8B | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00038491 | ||||||||
| WBPaper00055090 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
