WormBase Tree Display for Gene: WBGene00012857
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WBGene00012857 | SMap | S_parent | Sequence | CHROMOSOME_V | |||||
---|---|---|---|---|---|---|---|---|---|
Identity | Version | 3 | |||||||
Name | CGC_name | pbo-5 | Paper_evidence | WBPaper00031426 | |||||
Person_evidence | WBPerson655 | ||||||||
Sequence_name | Y44A6E.1 | ||||||||
Molecular_name | Y44A6E.1a | ||||||||
Y44A6E.1a.1 | |||||||||
CE32021 | |||||||||
Y44A6E.1b | |||||||||
CE37284 | |||||||||
Y44A6E.1b.1 | |||||||||
Other_name | lgc-2 | Paper_evidence | WBPaper00029376 | ||||||
Person_evidence | WBPerson1430 | ||||||||
CELE_Y44A6E.1 | Accession_evidence | NDB | BX284605 | ||||||
Public_name | pbo-5 | ||||||||
DB_info | Database | AceView | gene | 5V387 | |||||
WormQTL | gene | WBGene00012857 | |||||||
WormFlux | gene | WBGene00012857 | |||||||
NDB | locus_tag | CELE_Y44A6E.1 | |||||||
Panther | gene | CAEEL|WormBase=WBGene00012857|UniProtKB=G5ECT0 | |||||||
family | PTHR18945 | ||||||||
NCBI | gene | 189903 | |||||||
RefSeq | protein | NM_001029068.5 | |||||||
NM_001029069.7 | |||||||||
SwissProt | UniProtAcc | G5ECT0 | |||||||
UniProt_GCRP | UniProtAcc | G5ECT0 | |||||||
Species | Caenorhabditis elegans | ||||||||
History | Version_change | 1 | 26 May 2004 16:54:54 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of WS125 | ||
2 | 18 May 2007 16:58:23 | WBPerson2970 | Name_change | CGC_name | lgc-2 | ||||
3 | 01 Feb 2008 14:41:12 | WBPerson2970 | Event | Acquires_merge | WBGene00003944 | ||||
Name_change | CGC_name | pbo-5 | |||||||
Other_name | lgc-2 | ||||||||
Acquires_merge | WBGene00003944 | ||||||||
Status | Live | ||||||||
Gene_info | Biotype | SO:0001217 | |||||||
Gene_class | pbo | ||||||||
Allele (126) | |||||||||
Legacy_information | [C.elegansII] sa242 : pBoc step of defecation motor program completely absent, other aspects of motor program and timing normal; apparently normal feeding. NA1. [JT] | ||||||||
Strain | WBStrain00006657 | ||||||||
RNASeq_FPKM (74) | |||||||||
GO_annotation (18) | |||||||||
Ortholog (26) | |||||||||
Paralog (100) | |||||||||
Structured_description (2) | |||||||||
Molecular_info | Corresponding_CDS | Y44A6E.1a | |||||||
Y44A6E.1b | |||||||||
Corresponding_CDS_history | Y44A6E.1:wp87 | ||||||||
Corresponding_transcript | Y44A6E.1a.1 | ||||||||
Y44A6E.1b.1 | |||||||||
Other_sequence | Tcol_isotig20449 | ||||||||
Oden_isotig15669 | |||||||||
Associated_feature | WBsf647774 | ||||||||
WBsf662288 | |||||||||
WBsf662289 | |||||||||
WBsf1003664 | |||||||||
WBsf1003665 | |||||||||
WBsf1003666 | |||||||||
WBsf1022027 | |||||||||
WBsf1022028 | |||||||||
WBsf1022029 | |||||||||
Experimental_info | RNAi_result | WBRNAi00066374 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00056554 | Inferred_automatically | RNAi_primary | |||||||
Expr_pattern | Expr9628 | ||||||||
Expr1012602 | |||||||||
Expr1160028 | |||||||||
Expr2014762 | |||||||||
Expr2032996 | |||||||||
Drives_construct | WBCnstr00014189 | ||||||||
Construct_product | WBCnstr00042604 | ||||||||
Microarray_results (24) | |||||||||
Expression_cluster (104) | |||||||||
Interaction | WBInteraction000554935 | ||||||||
WBInteraction000556792 | |||||||||
Map_info | Map | V | Position | 25.8116 | |||||
Positive | Positive_clone | Y44A6E | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
Pseudo_map_position | |||||||||
Reference (12) | |||||||||
Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
Method | Gene |