WormBase Tree Display for Gene: WBGene00012909
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| WBGene00012909 | SMap | S_parent | Sequence | Y46G5A | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 2 | |||||||
| Name | CGC_name | spds-1 | Person_evidence | WBPerson649 | |||||
| Sequence_name | Y46G5A.19 | ||||||||
| Molecular_name | Y46G5A.19a | ||||||||
| Y46G5A.19a.1 | |||||||||
| CE31114 | |||||||||
| Y46G5A.19b | |||||||||
| CE21997 | |||||||||
| Y46G5A.19b.1 | |||||||||
| Other_name | CELE_Y46G5A.19 | Accession_evidence | NDB | BX284602 | |||||
| Public_name | spds-1 | ||||||||
| DB_info | Database | AceView | gene | 2N99 | |||||
| WormQTL | gene | WBGene00012909 | |||||||
| WormFlux | gene | WBGene00012909 | |||||||
| NDB | locus_tag | CELE_Y46G5A.19 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00012909|UniProtKB=B4E3X6 | |||||||
| family | PTHR11558 | ||||||||
| NCBI | gene | 174914 | |||||||
| RefSeq | protein | NM_001381634.1 | |||||||
| NM_001381635.2 | |||||||||
| TREEFAM | TREEFAM_ID | TF314466 | |||||||
| TrEMBL | UniProtAcc | B4E3X6 | |||||||
| G5EFG3 | |||||||||
| UniProt_GCRP | UniProtAcc | B4E3X6 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 26 May 2004 16:54:54 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of WS125 | ||
| 2 | 29 Mar 2011 15:17:47 | WBPerson2970 | Name_change | CGC_name | spds-1 | ||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | spds | ||||||||
| Allele (250) | |||||||||
| Strain | WBStrain00033156 | ||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00006162 | ||||||||
| 00006163 | |||||||||
| 00006164 | |||||||||
| 00006165 | |||||||||
| 00006166 | |||||||||
| 00006167 | |||||||||
| 00006168 | |||||||||
| 00018134 | |||||||||
| 00119876 | |||||||||
| 00119877 | |||||||||
| Ortholog (36) | |||||||||
| Structured_description | Concise_description | spds-1 encodes a spermidine synthase ortholog coexpressed in intestinal cells with smd-1 and odc-1; spds-1, smd-1 and odc-1, on the basis of orthology, are expected to be required for spermidine synthesis; a loss-of-function mutation of odc-1 is lethal; the spds-1 promoter has GATA- and initiator-(Inr)-like-elements that are conserved with its C. briggsae ortholog, and that are also found in the C. elegans and C. briggsae smd-1 promoters; the Inr-like-element of spds-1 is not its main transcriptional start site; unlike other metazoa, C. elegans lacks a spermine synthase ortholog. | Paper_evidence | WBPaper00005654 | |||||
| WBPaper00024333 | |||||||||
| WBPaper00028304 | |||||||||
| Curator_confirmed | WBPerson1843 | ||||||||
| WBPerson567 | |||||||||
| Date_last_updated | 29 Mar 2011 00:00:00 | ||||||||
| Automated_description | Predicted to enable spermidine synthase activity. Predicted to be involved in spermidine biosynthetic process. Predicted to be located in cytosol. Is an ortholog of human SRM (spermidine synthase). | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | Y46G5A.19a | |||||||
| Y46G5A.19b | |||||||||
| Corresponding_CDS_history | Y46G5A.19:wp80 | ||||||||
| Corresponding_transcript | Y46G5A.19a.1 | ||||||||
| Y46G5A.19b.1 | |||||||||
| Other_sequence (84) | |||||||||
| Associated_feature (13) | |||||||||
| Experimental_info | RNAi_result | WBRNAi00020667 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00113749 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00097996 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00056676 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00113753 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00037131 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr1028227 | ||||||||
| Expr1035715 | |||||||||
| Expr1160147 | |||||||||
| Expr2016029 | |||||||||
| Expr2034264 | |||||||||
| Drives_construct | WBCnstr00011149 | ||||||||
| Construct_product | WBCnstr00011149 | ||||||||
| Microarray_results (22) | |||||||||
| Expression_cluster (135) | |||||||||
| Interaction (34) | |||||||||
| Map_info | Map | II | Position | 11.2703 | Error | 0.028156 | |||
| Positive | Positive_clone | Y46G5A | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00026861 | ||||||||
| WBPaper00038491 | |||||||||
| WBPaper00038989 | |||||||||
| WBPaper00044578 | |||||||||
| WBPaper00055090 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
