WormBase Tree Display for Gene: WBGene00012953
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| WBGene00012953 | SMap | S_parent | Sequence | Y47H9C | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 2 | |||||||
| Name | CGC_name | fbxa-216 | Person_evidence | WBPerson655 | |||||
| Sequence_name | Y47H9C.10 | ||||||||
| Molecular_name | Y47H9C.10 | ||||||||
| Y47H9C.10.1 | |||||||||
| CE53840 | |||||||||
| Other_name | CELE_Y47H9C.10 | Accession_evidence | NDB | BX284601 | |||||
| Public_name | fbxa-216 | ||||||||
| DB_info | Database | AceView | gene | 1M493 | |||||
| WormQTL | gene | WBGene00012953 | |||||||
| WormFlux | gene | WBGene00012953 | |||||||
| NDB | locus_tag | CELE_Y47H9C.10 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00012953|UniProtKB=Q9XWD4 | |||||||
| family | PTHR23015 | ||||||||
| NCBI | gene | 190001 | |||||||
| RefSeq | protein | NM_001377646.1 | |||||||
| TREEFAM | TREEFAM_ID | TF322006 | |||||||
| TrEMBL | UniProtAcc | Q9XWD4 | |||||||
| UniProt_GCRP | UniProtAcc | Q9XWD4 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 26 May 2004 16:54:54 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of WS125 | ||
| 2 | 01 Mar 2007 11:55:19 | WBPerson2970 | Name_change | CGC_name | fbxa-216 | ||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | fbxa | ||||||||
| Allele (46) | |||||||||
| RNASeq_FPKM (74) | |||||||||
| Contained_in_operon | CEOP1919 | ||||||||
| Ortholog (43) | |||||||||
| Paralog (225) | |||||||||
| Structured_description | Automated_description | Enriched in OLL; PLM; PVD; and somatic gonad precursor based on microarray; tiling array; and RNA-seq studies. Is affected by several genes including skn-1; hsf-1; and eat-2 based on microarray and RNA-seq studies. Is affected by seven chemicals including rotenone; Alovudine; and antimycin based on RNA-seq and microarray studies. Is predicted to encode a protein with the following domains: Mos1 transposase, HTH domain; FTH domain; HTH domain in Mos1 transposase; F-box domain; Domain of unknown function DUF38/FTH, Caenorhabditis species; and F-box A protein FB224. | Paper_evidence | WBPaper00065943 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | Y47H9C.10 | |||||||
| Corresponding_CDS_history | Y47H9C.10:wp104 | ||||||||
| Y47H9C.10:wp187 | |||||||||
| Y47H9C.10:wp274 | |||||||||
| Corresponding_transcript | Y47H9C.10.1 | ||||||||
| Associated_feature | WBsf985412 | ||||||||
| WBsf1010805 | |||||||||
| WBsf218566 | |||||||||
| Experimental_info | RNAi_result | WBRNAi00004664 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00004662 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00014683 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00037205 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00056840 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr1018738 | ||||||||
| Expr1035745 | |||||||||
| Expr1160296 | |||||||||
| Expr2011524 | |||||||||
| Expr2029761 | |||||||||
| Microarray_results (16) | |||||||||
| Expression_cluster (88) | |||||||||
| Interaction (15) | |||||||||
| Map_info | Map | I | Position | 12.9099 | Error | 0.001854 | |||
| Positive | Positive_clone | Y47H9C | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
