WormBase Tree Display for Gene: WBGene00013128
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| WBGene00013128 | SMap | S_parent | Sequence | Y52B11A | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 3 | |||||||
| Name | CGC_name | dxbp-1 | Person_evidence | WBPerson1157 | |||||
| Sequence_name | Y52B11A.9 | ||||||||
| Molecular_name | Y52B11A.9 | ||||||||
| Y52B11A.9.1 | |||||||||
| CE20297 | |||||||||
| Other_name | dox-1 | Paper_evidence | WBPaper00036256 | ||||||
| Person_evidence | WBPerson1157 | ||||||||
| CELE_Y52B11A.9 | Accession_evidence | NDB | BX284601 | ||||||
| Public_name | dxbp-1 | ||||||||
| DB_info | Database | AceView | gene | 1L626 | |||||
| WormQTL | gene | WBGene00013128 | |||||||
| WormFlux | gene | WBGene00013128 | |||||||
| NDB | locus_tag | CELE_Y52B11A.9 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00013128|UniProtKB=Q9XWF2 | |||||||
| family | PTHR12805 | ||||||||
| NCBI | gene | 173005 | |||||||
| RefSeq | protein | NM_060459.6 | |||||||
| TREEFAM | TREEFAM_ID | TF314393 | |||||||
| TrEMBL | UniProtAcc | Q9XWF2 | |||||||
| UniProt_GCRP | UniProtAcc | Q9XWF2 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 26 May 2004 16:54:54 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of WS125 | ||
| 2 | 18 Nov 2013 10:40:57 | WBPerson2970 | Name_change | CGC_name | dox-1 | ||||
| 3 | 01 Jun 2015 15:07:11 | WBPerson2970 | Name_change | CGC_name | dxbp-1 | ||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | dxbp | ||||||||
| Allele (92) | |||||||||
| Strain | WBStrain00037264 | ||||||||
| WBStrain00033859 | |||||||||
| WBStrain00051277 | |||||||||
| WBStrain00051898 | |||||||||
| WBStrain00055594 | |||||||||
| WBStrain00055593 | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00103453 | ||||||||
| 00103454 | |||||||||
| 00103455 | |||||||||
| 00103456 | |||||||||
| 00103457 | |||||||||
| Ortholog (33) | |||||||||
| Structured_description | Automated_description | Predicted to enable double-stranded DNA binding activity. Predicted to be involved in DNA damage response and DNA replication. Located in nucleolus. Expressed in several structures, including somatic cell. Is an ortholog of human KIN (Kin17 DNA and RNA binding protein). | Paper_evidence | WBPaper00065943 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | Y52B11A.9 | |||||||
| Corresponding_transcript | Y52B11A.9.1 | ||||||||
| Other_sequence (46) | |||||||||
| Associated_feature | WBsf649613 | ||||||||
| WBsf985165 | |||||||||
| WBsf1010641 | |||||||||
| WBsf220308 | |||||||||
| WBsf220309 | |||||||||
| Transcription_factor | WBTranscriptionFactor001101 | ||||||||
| Experimental_info | RNAi_result (19) | ||||||||
| Expr_pattern | Expr7727 | ||||||||
| Expr9474 | |||||||||
| Expr1020594 | |||||||||
| Expr1035823 | |||||||||
| Expr1160663 | |||||||||
| Expr2011123 | |||||||||
| Expr2029359 | |||||||||
| Drives_construct | WBCnstr00012872 | ||||||||
| Construct_product | WBCnstr00014039 | ||||||||
| WBCnstr00016530 | |||||||||
| Microarray_results (19) | |||||||||
| Expression_cluster (99) | |||||||||
| Interaction (26) | |||||||||
| Map_info | Map | I | Position | 6.48665 | |||||
| Positive | Positive_clone | Y52B11A | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00005423 | ||||||||
| WBPaper00036256 | |||||||||
| WBPaper00038444 | |||||||||
| WBPaper00038491 | |||||||||
| WBPaper00048493 | |||||||||
| WBPaper00055090 | |||||||||
| WBPaper00064339 | |||||||||
| WBPaper00064898 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| This gene was originally assigned dox-1 and belonged to the now retired "dox" for "Downstream Of Xbp-1" gene class. The "dox" gene class has now been renamed as "Dependent On X sites" | Curator_confirmed | WBPerson2970 | |||||||
| Method | Gene |
