WormBase Tree Display for Gene: WBGene00013135
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| WBGene00013135 | SMap | S_parent | Sequence | Y53C10A | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 3 | |||||||
| Name | CGC_name | rga-2 | Person_evidence | WBPerson351 | |||||
| Sequence_name | Y53C10A.4 | ||||||||
| Molecular_name | Y53C10A.4 | ||||||||
| Y53C10A.4.1 | |||||||||
| CE22372 | |||||||||
| Other_name | CELE_Y53C10A.4 | Accession_evidence | NDB | BX284601 | |||||
| Public_name | rga-2 | ||||||||
| DB_info | Database | AceView | gene | 1M577 | |||||
| WormQTL | gene | WBGene00013135 | |||||||
| WormFlux | gene | WBGene00013135 | |||||||
| NDB | locus_tag | CELE_Y53C10A.4 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00013135|UniProtKB=Q9XW53 | |||||||
| family | PTHR23179 | ||||||||
| NCBI | gene | 173079 | |||||||
| RefSeq | protein | NM_060634.7 | |||||||
| TREEFAM | TREEFAM_ID | TF331062 | |||||||
| TrEMBL | UniProtAcc | Q9XW53 | |||||||
| UniProt_GCRP | UniProtAcc | Q9XW53 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 26 May 2004 16:54:54 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of WS125 | ||
| 2 | 25 Jan 2005 16:28:46 | WBPerson2970 | Name_change | CGC_name | rhga-1 | ||||
| 3 | 18 Feb 2005 13:16:27 | WBPerson2970 | Name_change | CGC_name | rhga-1 to rga-2 | ||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | rga | ||||||||
| Allele (133) | |||||||||
| Strain | WBStrain00026577 | ||||||||
| WBStrain00036422 | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00103123 | ||||||||
| 00103124 | |||||||||
| 00103125 | |||||||||
| 00120068 | |||||||||
| Ortholog (46) | |||||||||
| Paralog | WBGene00007064 | Caenorhabditis elegans | From_analysis | Panther | |||||
| WormBase-Compara | |||||||||
| Structured_description | Automated_description | Predicted to enable GTPase activator activity. Predicted to be involved in signal transduction. Expressed in rectum; socket cell; uterus; and vulva. Is an ortholog of human ARHGAP20 (Rho GTPase activating protein 20). | Paper_evidence | WBPaper00065943 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | Y53C10A.4 | |||||||
| Corresponding_transcript | Y53C10A.4.1 | ||||||||
| Other_sequence | EW744130.1 | ||||||||
| EX541773.1 | |||||||||
| AS10880 | |||||||||
| ASC02822_1 | |||||||||
| Dviv_isotig13574 | |||||||||
| FE914300.1 | |||||||||
| JI165420.1 | |||||||||
| ACC05890_1 | |||||||||
| EX540885.1 | |||||||||
| Acan_isotig19963 | |||||||||
| Associated_feature (21) | |||||||||
| Experimental_info | RNAi_result (15) | ||||||||
| Expr_pattern | Expr4954 | ||||||||
| Expr1021640 | |||||||||
| Expr1035827 | |||||||||
| Expr1160679 | |||||||||
| Expr2015314 | |||||||||
| Expr2033548 | |||||||||
| Drives_construct | WBCnstr00012365 | ||||||||
| Construct_product | WBCnstr00012365 | ||||||||
| Microarray_results (19) | |||||||||
| Expression_cluster (135) | |||||||||
| Interaction (33) | |||||||||
| Map_info | Map | I | Position | 13.0175 | Error | 0.000489 | |||
| Positive | Positive_clone | Y53C10A | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Reference (12) | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
