WormBase Tree Display for Gene: WBGene00013136
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| WBGene00013136 | SMap | S_parent | Sequence | Y53C10A | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 2 | |||||||
| Name | CGC_name | tmem-189 | |||||||
| Sequence_name | Y53C10A.5 | ||||||||
| Molecular_name | Y53C10A.5 | ||||||||
| Y53C10A.5.1 | |||||||||
| CE22373 | |||||||||
| Other_name | CELE_Y53C10A.5 | Accession_evidence | NDB | BX284601 | |||||
| Public_name | tmem-189 | ||||||||
| DB_info | Database | AceView | gene | 1M593 | |||||
| WormQTL | gene | WBGene00013136 | |||||||
| WormFlux | gene | WBGene00013136 | |||||||
| NDB | locus_tag | CELE_Y53C10A.5 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00013136|UniProtKB=Q9XW52 | |||||||
| family | PTHR48230 | ||||||||
| NCBI | gene | 173080 | |||||||
| RefSeq | protein | NM_060635.9 | |||||||
| TREEFAM | TREEFAM_ID | TF106147 | |||||||
| TrEMBL | UniProtAcc | Q9XW52 | |||||||
| UniProt_GCRP | UniProtAcc | Q9XW52 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 26 May 2004 16:54:54 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of WS125 | ||
| 2 | 10 Mar 2020 17:24:51 | WBPerson1983 | Name_change | CGC_name | tmem-189 | ||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | tmem | ||||||||
| Allele (82) | |||||||||
| Strain | WBStrain00003025 | ||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00103117 | ||||||||
| 00103118 | |||||||||
| 00103119 | |||||||||
| 00103120 | |||||||||
| 00103121 | |||||||||
| 00103122 | |||||||||
| Ortholog (38) | |||||||||
| Paralog (18) | |||||||||
| Structured_description | Automated_description | Predicted to enable plasmanylethanolamine desaturase activity. Predicted to be involved in ether lipid biosynthetic process. Predicted to be located in endoplasmic reticulum membrane. Is an ortholog of human PEDS1 (plasmanylethanolamine desaturase 1) and PEDS1-UBE2V1 (PEDS1-UBE2V1 readthrough). | Paper_evidence | WBPaper00065943 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | Y53C10A.5 | |||||||
| Corresponding_transcript | Y53C10A.5.1 | ||||||||
| Other_sequence (69) | |||||||||
| Associated_feature (11) | |||||||||
| Experimental_info | RNAi_result | WBRNAi00004710 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00002157 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00057246 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr7031 | ||||||||
| Expr1012706 | |||||||||
| Expr1035828 | |||||||||
| Expr1160680 | |||||||||
| Expr2007828 | |||||||||
| Expr2026068 | |||||||||
| Drives_construct | WBCnstr00003525 | ||||||||
| WBCnstr00029752 | |||||||||
| Construct_product | WBCnstr00029752 | ||||||||
| Microarray_results (20) | |||||||||
| Expression_cluster (139) | |||||||||
| Map_info | Map | I | Position | 13.0182 | |||||
| Positive | Positive_clone | Y53C10A | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00028621 | ||||||||
| WBPaper00038491 | |||||||||
| WBPaper00055090 | |||||||||
| WBPaper00059383 | |||||||||
| WBPaper00064516 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
