WormBase Tree Display for Gene: WBGene00013455
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| WBGene00013455 | SMap | S_parent | Sequence | Y67A10A | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 2 | |||||||
| Name | CGC_name | ssu-2 | Person_evidence | WBPerson431 | |||||
| Sequence_name | Y67A10A.6 | ||||||||
| Molecular_name (12) | |||||||||
| Other_name | CELE_Y67A10A.6 | Accession_evidence | NDB | BX284604 | |||||
| Public_name | ssu-2 | ||||||||
| DB_info | Database | AceView | gene | 4P131 | |||||
| WormQTL | gene | WBGene00013455 | |||||||
| WormFlux | gene | WBGene00013455 | |||||||
| NDB | locus_tag | CELE_Y67A10A.6 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00013455|UniProtKB=H1UBK3 | |||||||
| family | PTHR15852 | ||||||||
| NCBI | gene | 178379 | |||||||
| RefSeq | protein | NM_001268876.2 | |||||||
| NM_001268875.3 | |||||||||
| NM_001268877.3 | |||||||||
| NM_001306937.4 | |||||||||
| TREEFAM | TREEFAM_ID | TF320855 | |||||||
| TrEMBL | UniProtAcc | H1UBK5 | |||||||
| A0A061ADP1 | |||||||||
| H1UBK3 | |||||||||
| H1UBK4 | |||||||||
| UniProt_GCRP | UniProtAcc | H1UBK3 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 26 May 2004 16:54:55 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of WS125 | ||
| 2 | 02 Jul 2004 17:05:30 | WBPerson1971 | Name_change | CGC_name | ssu-2 | ||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | ssu | ||||||||
| Allele (95) | |||||||||
| RNASeq_FPKM (74) | |||||||||
| Ortholog (40) | |||||||||
| Structured_description | Automated_description | Enriched in muscle cell; neurons; retrovesicular ganglion; and somatic gonad precursor based on tiling array; microarray; RNA-seq; and single-cell RNA-seq studies. Is affected by several genes including eat-2; clk-1; and sek-1 based on microarray and RNA-seq studies. Is affected by ten chemicals including aldicarb; stavudine; and Zidovudine based on microarray and RNA-seq studies. Is an ortholog of human SSUH2 (ssu-2 homolog). | Paper_evidence | WBPaper00065943 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | Y67A10A.6a | |||||||
| Y67A10A.6b | |||||||||
| Y67A10A.6c | |||||||||
| Y67A10A.6d | |||||||||
| Corresponding_CDS_history | Y67A10A.6:wp229 | ||||||||
| Corresponding_transcript | Y67A10A.6a.1 | ||||||||
| Y67A10A.6b.1 | |||||||||
| Y67A10A.6c.1 | |||||||||
| Y67A10A.6d.1 | |||||||||
| Other_sequence | BM00494 | ||||||||
| Dviv_isotig22704 | |||||||||
| DIC00391_1 | |||||||||
| PTC01095_1 | |||||||||
| JI177108.1 | |||||||||
| PT01264 | |||||||||
| DI00446 | |||||||||
| BMC17398_1 | |||||||||
| Associated_feature | WBsf660926 | ||||||||
| WBsf998558 | |||||||||
| WBsf998559 | |||||||||
| WBsf998560 | |||||||||
| WBsf1018640 | |||||||||
| WBsf1018641 | |||||||||
| Experimental_info | RNAi_result | WBRNAi00057971 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00033526 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr1025893 | ||||||||
| Expr1036015 | |||||||||
| Expr1161399 | |||||||||
| Expr2016949 | |||||||||
| Expr2035097 | |||||||||
| Microarray_results (18) | |||||||||
| Expression_cluster (128) | |||||||||
| Map_info | Map | IV | Position | 11.7585 | |||||
| Positive | Positive_clone | Y67A10A | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Mapping_data | Multi_point | 5062 | |||||||
| 4998 | |||||||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00038491 | ||||||||
| WBPaper00055090 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
