WormBase Tree Display for Gene: WBGene00013578
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| WBGene00013578 | SMap | S_parent | Sequence | CHROMOSOME_III | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 2 | |||||||
| Name | CGC_name | scav-2 | |||||||
| Sequence_name | Y76A2B.6 | ||||||||
| Molecular_name | Y76A2B.6 | ||||||||
| Y76A2B.6.1 | |||||||||
| CE46884 | |||||||||
| Other_name | CELE_Y76A2B.6 | Accession_evidence | NDB | BX284603 | |||||
| Public_name | scav-2 | ||||||||
| DB_info | Database | AceView | gene | 3O640 | |||||
| WormQTL | gene | WBGene00013578 | |||||||
| WormFlux | gene | WBGene00013578 | |||||||
| NDB | locus_tag | CELE_Y76A2B.6 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00013578|UniProtKB=G5EBM7 | |||||||
| family | PTHR11923 | ||||||||
| NCBI | gene | 176787 | |||||||
| RefSeq | protein | NM_067401.7 | |||||||
| TrEMBL | UniProtAcc | G5EBM7 | |||||||
| UniProt_GCRP | UniProtAcc | G5EBM7 | |||||||
| OMIM | gene | 173510 | |||||||
| 602257 | |||||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 26 May 2004 16:54:55 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of WS125 | ||
| 2 | 08 Mar 2010 11:14:55 | WBPerson2970 | Name_change | CGC_name | scav-2 | ||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | scav | ||||||||
| Allele (74) | |||||||||
| Strain | WBStrain00031683 | ||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00009899 | ||||||||
| 00009900 | |||||||||
| 00009901 | |||||||||
| 00009902 | |||||||||
| 00120393 | |||||||||
| Contained_in_operon | CEOP3812 | ||||||||
| Ortholog (50) | |||||||||
| Paralog | WBGene00008542 | Caenorhabditis elegans | From_analysis | TreeFam | |||||
| Panther | |||||||||
| WormBase-Compara | |||||||||
| WBGene00008692 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
| Panther | |||||||||
| WormBase-Compara | |||||||||
| WBGene00011076 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
| Panther | |||||||||
| WormBase-Compara | |||||||||
| WBGene00013039 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| WBGene00015389 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
| Panther | |||||||||
| WormBase-Compara | |||||||||
| Structured_description | Concise_description | Y76A2B.6 encodes a ortholog of human CD36 antigen (OMIM:173510, mutated in platelet glycoprotein IV deficiency); Y76A2B.6 is needed for cell corpse engulfment in the germline and in the three-fold embryo, and for migration of the anterior arm of the gonad. | Paper_evidence | WBPaper00018249 | |||||
| Curator_confirmed | WBPerson1823 | ||||||||
| WBPerson567 | |||||||||
| Date_last_updated | 17 Jun 2004 00:00:00 | ||||||||
| Automated_description | Predicted to enable scavenger receptor activity. Predicted to be involved in endocytosis. Predicted to be located in cytoplasm. Human ortholog(s) of this gene implicated in several diseases, including Alzheimer's disease; autoimmune disease (multiple); hematologic cancer (multiple); and myositis (multiple). Is an ortholog of human SCARB1 (scavenger receptor class B member 1). | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Disease_info | Potential_model (25) | ||||||||
| Molecular_info | Corresponding_CDS | Y76A2B.6 | |||||||
| Corresponding_CDS_history | Y76A2B.6:wp85 | ||||||||
| Y76A2B.6:wp229 | |||||||||
| Corresponding_transcript | Y76A2B.6.1 | ||||||||
| Other_sequence (26) | |||||||||
| Associated_feature | WBsf718017 | ||||||||
| WBsf227767 | |||||||||
| Experimental_info | RNAi_result | WBRNAi00006165 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00000477 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00058494 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00078835 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Chronogram610 | ||||||||
| Expr7129 | |||||||||
| Expr1021464 | |||||||||
| Expr1036070 | |||||||||
| Expr1161903 | |||||||||
| Expr2015615 | |||||||||
| Expr2033850 | |||||||||
| Drives_construct | WBCnstr00002858 | ||||||||
| Microarray_results (17) | |||||||||
| Expression_cluster (111) | |||||||||
| Interaction (12) | |||||||||
| Map_info | Map | III | Position | 21.2639 | Error | 0.001523 | |||
| Positive | Positive_clone | Y76A2B | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00010266 | ||||||||
| WBPaper00018248 | |||||||||
| WBPaper00018249 | |||||||||
| WBPaper00032930 | |||||||||
| WBPaper00038491 | |||||||||
| WBPaper00052183 | |||||||||
| WBPaper00055090 | |||||||||
| WBPaper00065146 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
