WormBase Tree Display for Gene: WBGene00013610

WBGene00013610 SMap: S_parent: Sequence: CHROMOSOME_V
  Identity: Version: 2
    Name: CGC_name: fbxa-206 Person_evidence: WBPerson655
      Sequence_name: Y102A5C.1
      Molecular_name: Y102A5C.1
        Y102A5C.1.1
        CE19287
      Other_name: CELE_Y102A5C.1 Accession_evidence: NDB BX284605
      Public_name: fbxa-206
    DB_info: Database: AceView gene 5R398
        WormQTL gene WBGene00013610
        WormFlux gene WBGene00013610
        NDB locus_tag CELE_Y102A5C.1
        Panther gene CAEEL|WormBase=WBGene00013610|UniProtKB=G5EDK0
          family PTHR23015
        NCBI gene 180130
        RefSeq protein NM_074874.8
        TREEFAM TREEFAM_ID TF315839
        TrEMBL UniProtAcc G5EDK0
        UniProt_GCRP UniProtAcc G5EDK0
    Species: Caenorhabditis elegans
    History: Version_change: 1 26 May 2004 16:54:55 WBPerson1971 Event: Imported: Initial conversion from CDS class of WS125
        2 01 Mar 2007 11:55:19 WBPerson2970 Name_change: CGC_name: fbxa-206
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: fbxa
    Allele (90)
    RNASeq_FPKM (74)
    Ortholog (61)
    Paralog (222)
    Structured_description: Concise_description: This gene encodes a protein containing an F-box, a motif predicted to mediate protein-protein interactions either with homologs of yeast Skp-1p or with other proteins; this gene's encoded protein also contains an FTH/DUF38 motif, which may also mediate protein-protein interaction. Paper_evidence: WBPaper00012854
          Curator_confirmed: WBPerson567
          Date_last_updated: 17 Jun 2004 00:00:00
      Automated_description: Enriched in germ line; germline precursor cell; head mesodermal cell; neurons; and retrovesicular ganglion based on tiling array; RNA-seq; single-cell RNA-seq; and microarray studies. Is affected by several genes including daf-2; skn-1; and glp-1 based on microarray; tiling array; and RNA-seq studies. Is affected by eleven chemicals including manganese chloride; Sirolimus; and antimycin based on RNA-seq and microarray studies. Is predicted to encode a protein with the following domains: F-box-like domain superfamily; Mos1 transposase, HTH domain; FTH domain; HTH domain in Mos1 transposase; F-box domain; Domain of unknown function DUF38/FTH, Caenorhabditis species; and F-box A protein FB224. Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: Y102A5C.1
    Corresponding_transcript: Y102A5C.1.1
    Other_sequence: CR05866
      CRC04463_1
    Associated_feature: WBsf653498
      WBsf669812
      WBsf009368
      WBsf235163
  Experimental_info: RNAi_result: WBRNAi00036448 Inferred_automatically: RNAi_primary
      WBRNAi00007523 Inferred_automatically: RNAi_primary
      WBRNAi00019793 Inferred_automatically: RNAi_primary
      WBRNAi00055128 Inferred_automatically: RNAi_primary
    Expr_pattern: Expr1023405
      Expr1036090
      Expr1158663
      Expr2011517
      Expr2029754
    Drives_construct: WBCnstr00029587
    Construct_product: WBCnstr00029587
    Microarray_results (17)
    Expression_cluster (152)
    Interaction (238)
  Map_info: Map: V Position: 11.3488 Error: 0.001955
    Positive: Positive_clone: Y102A5C Inferred_automatically: From sequence, transcript, pseudogene data
    Pseudo_map_position
  Reference: WBPaper00012854
    WBPaper00064898
  Remark: Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. CGC_data_submission
  Method: Gene