WormBase Tree Display for Gene: WBGene00013620

WBGene00013620 SMap: S_parent: Sequence: Y102A5C
  Identity: Version: 2
    Name: CGC_name: fbxa-111 Person_evidence: WBPerson655
      Sequence_name: Y102A5C.14
      Molecular_name: Y102A5C.14
        Y102A5C.14.1
        CE20386
      Other_name: CELE_Y102A5C.14 Accession_evidence: NDB BX284605
      Public_name: fbxa-111
    DB_info: Database: AceView gene 5R426
        WormQTL gene WBGene00013620
        WormFlux gene WBGene00013620
        NDB locus_tag CELE_Y102A5C.14
        Panther gene CAEEL|WormBase=WBGene00013620|UniProtKB=Q9XX88
          family PTHR23015
        NCBI gene 190838
        RefSeq protein NM_074884.2
        TREEFAM TREEFAM_ID TF322006
        TrEMBL UniProtAcc Q9XX88
        UniProt_GCRP UniProtAcc Q9XX88
    Species: Caenorhabditis elegans
    History: Version_change: 1 26 May 2004 16:54:55 WBPerson1971 Event: Imported: Initial conversion from CDS class of WS125
        2 12 Dec 2005 15:18:56 WBPerson2970 Name_change: CGC_name: fbxa-111
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: fbxa
    Allele (72)
    RNASeq_FPKM (74)
    Ortholog (16)
    Paralog (226)
    Structured_description: Concise_description: This gene encodes a protein containing an F-box, a motif predicted to mediate protein-protein interactions either with homologs of yeast Skp-1p or with other proteins; this gene's encoded protein also contains an FTH/DUF38 motif, which may also mediate protein-protein interaction. Paper_evidence: WBPaper00012854
          Curator_confirmed: WBPerson567
          Date_last_updated: 17 Jun 2004 00:00:00
      Automated_description: Enriched in AFD based on RNA-seq studies. Is affected by several genes including sir-2.1; clk-1; and pgl-1 based on tiling array; microarray; and RNA-seq studies. Is affected by tryptophan; methylmercuric chloride; and Sirolimus based on microarray studies. Is predicted to encode a protein with the following domains: F-box-like domain superfamily; FTH domain; F-box domain; Domain of unknown function DUF38/FTH, Caenorhabditis species; and F-box A protein FB224. Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: Y102A5C.14
    Corresponding_transcript: Y102A5C.14.1
    Associated_feature: WBsf1002572
      WBsf1021216
  Experimental_info: RNAi_result: WBRNAi00019820 Inferred_automatically: RNAi_primary
      WBRNAi00036455 Inferred_automatically: RNAi_primary
      WBRNAi00078340 Inferred_automatically: RNAi_primary
      WBRNAi00019797 Inferred_automatically: RNAi_primary
      WBRNAi00055130 Inferred_automatically: RNAi_primary
      WBRNAi00019796 Inferred_automatically: RNAi_primary
      WBRNAi00055131 Inferred_automatically: RNAi_primary
      WBRNAi00055155 Inferred_automatically: RNAi_primary
      WBRNAi00036456 Inferred_automatically: RNAi_primary
      WBRNAi00019819 Inferred_automatically: RNAi_primary
    Expr_pattern: Expr1158665
      Expr2011457
      Expr2029695
    Drives_construct: WBCnstr00029581
    Construct_product: WBCnstr00029581
    Microarray_results (13)
    Expression_cluster (52)
    Interaction (147)
  Map_info: Map: V Position: 11.372 Error: 0.000471
    Positive: Positive_clone: Y102A5C Inferred_automatically: From sequence, transcript, pseudogene data
    Pseudo_map_position
  Reference: WBPaper00012854
  Remark: Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. CGC_data_submission
  Method: Gene