WormBase Tree Display for Gene: WBGene00013652
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| WBGene00013652 | SMap | S_parent | Sequence | Y105C5B | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 2 | |||||||
| Name | CGC_name | sams-2 | Person_evidence | WBPerson1711 | |||||
| Sequence_name | Y105C5B.12 | ||||||||
| Molecular_name | Y105C5B.12 | ||||||||
| Other_name | CELE_Y105C5B.12 | Accession_evidence | NDB | BX284604 | |||||
| Public_name | sams-2 | ||||||||
| DB_info | Database | AceView | gene | 4Q708 | |||||
| WormQTL | gene | WBGene00013652 | |||||||
| NDB | locus_tag | CELE_Y105C5B.12 | |||||||
| NCBI | gene | 178446 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 26 May 2004 16:54:55 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of WS125 | ||
| 2 | 10 Sep 2008 16:37:04 | WBPerson2970 | Name_change | CGC_name | sams-2 | ||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0000336 | |||||||
| Gene_class | sams | ||||||||
| Allele (53) | |||||||||
| Strain | WBStrain00033298 | ||||||||
| RNASeq_FPKM (74) | |||||||||
| Ortholog | WBGene00038995 | Caenorhabditis briggsae | From_analysis | OrthoMCL | |||||
| WBGene00038996 | Caenorhabditis briggsae | From_analysis | OrthoMCL | ||||||
| Structured_description | Automated_description | Enriched in NSM; OLL; PVD; and germ line based on proteomic; microarray; tiling array; and RNA-seq studies. Is affected by several genes including daf-16; eat-2; and clk-1 based on RNA-seq and microarray studies. Is affected by eleven chemicals including methylmercuric chloride; stavudine; and allantoin based on microarray and RNA-seq studies. | Paper_evidence | WBPaper00065943 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS_history | Y105C5B.12:wp62 | |||||||
| Y105C5B.12:wp88 | |||||||||
| Y105C5B.12a:wp201 | |||||||||
| Y105C5B.12b:wp201 | |||||||||
| Corresponding_pseudogene | Y105C5B.12 | ||||||||
| Other_sequence (32) | |||||||||
| Associated_feature | WBsf231259 | ||||||||
| WBsf231260 | |||||||||
| Experimental_info | Microarray_results | A_12_P139300 | |||||||
| A_12_P171572 | |||||||||
| Aff_Y105C5.JJ | |||||||||
| GPL19516_CGZ0013009 | |||||||||
| GPL8304_CE_WBGene00013652_A | |||||||||
| GPL8673_Y105C5B_12aP00324 | |||||||||
| GPL8673_Y105C5B_12bP00378 | |||||||||
| cea2.d.41939 | |||||||||
| cea2.d.41953 | |||||||||
| Expression_cluster (81) | |||||||||
| Interaction (60) | |||||||||
| Map_info | Map | IV | Position | 14.4686 | Error | 0.001205 | |||
| Positive | Positive_clone | Y105C5B | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00029254 | ||||||||
| WBPaper00038491 | |||||||||
| WBPaper00052390 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
