WormBase Tree Display for Gene: WBGene00013676
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| WBGene00013676 | SMap | S_parent | Sequence | Y105E8A | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 2 | |||||||
| Name | CGC_name | ekl-4 | Person_evidence | WBPerson524 | |||||
| WBPerson637 | |||||||||
| Sequence_name | Y105E8A.17 | ||||||||
| Molecular_name | Y105E8A.17a | ||||||||
| Y105E8A.17a.1 | |||||||||
| CE29836 | |||||||||
| Y105E8A.17b | |||||||||
| CE41712 | |||||||||
| Y105E8A.17b.1 | |||||||||
| Other_name | Y105E8E.t | Curator_confirmed | WBPerson1983 | ||||||
| Remark | Old cosmid naming mapped via unique overlapping PCR_product on CDSs | ||||||||
| CELE_Y105E8A.17 | Accession_evidence | NDB | BX284601 | ||||||
| Public_name | ekl-4 | ||||||||
| DB_info | Database | WormQTL | gene | WBGene00013676 | |||||
| WormFlux | gene | WBGene00013676 | |||||||
| NDB | locus_tag | CELE_Y105E8A.17 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00013676|UniProtKB=A8XQE0 | |||||||
| family | PTHR12855 | ||||||||
| NCBI | gene | 173310 | |||||||
| RefSeq | protein | NM_001129058.4 | |||||||
| NM_170949.8 | |||||||||
| TREEFAM | TREEFAM_ID | TF354261 | |||||||
| TrEMBL | UniProtAcc | A8XQE0 | |||||||
| Q8WQA7 | |||||||||
| UniProt_GCRP | UniProtAcc | A8XQE0 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 26 May 2004 16:54:55 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of WS125 | ||
| 2 | 18 Jul 2005 13:34:00 | WBPerson2970 | Name_change | CGC_name | ekl-4 | ||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | ekl | ||||||||
| Allele (149) | |||||||||
| Strain | WBStrain00033868 | ||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation (15) | |||||||||
| Ortholog (35) | |||||||||
| Structured_description | Automated_description | Predicted to enable transcription corepressor activity. Involved in negative regulation of cell fate specification. Predicted to be located in chromosome and nucleus. Predicted to be part of NuA4 histone acetyltransferase complex and Swr1 complex. Is an ortholog of human DMAP1 (DNA methyltransferase 1 associated protein 1). | Paper_evidence | WBPaper00065943 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | Y105E8A.17a | |||||||
| Y105E8A.17b | |||||||||
| Corresponding_transcript | Y105E8A.17a.1 | ||||||||
| Y105E8A.17b.1 | |||||||||
| Other_sequence (47) | |||||||||
| Associated_feature | WBsf643844 | ||||||||
| WBsf655756 | |||||||||
| WBsf978873 | |||||||||
| WBsf218798 | |||||||||
| WBsf218799 | |||||||||
| WBsf218800 | |||||||||
| Transcription_factor | WBTranscriptionFactor001083 | ||||||||
| Experimental_info | RNAi_result (15) | ||||||||
| Expr_pattern | Expr7704 | ||||||||
| Expr1015084 | |||||||||
| Expr1036106 | |||||||||
| Expr1158754 | |||||||||
| Expr2011266 | |||||||||
| Expr2029502 | |||||||||
| Drives_construct | WBCnstr00012849 | ||||||||
| Microarray_results (21) | |||||||||
| Expression_cluster (90) | |||||||||
| Interaction (48) | |||||||||
| Map_info | Map | I | Position | 25.7276 | Error | 0.010247 | |||
| Positive | Positive_clone | Y105E8A | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Mapping_data | Multi_point | 5315 | |||||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00010663 | ||||||||
| WBPaper00027634 | |||||||||
| WBPaper00031487 | |||||||||
| WBPaper00036500 | |||||||||
| WBPaper00038491 | |||||||||
| WBPaper00039481 | |||||||||
| WBPaper00055090 | |||||||||
| WBPaper00064339 | |||||||||
| WBPaper00065308 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
