WormBase Tree Display for Gene: WBGene00013888
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| WBGene00013888 | SMap | S_parent | Sequence | ZC412 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 2 | |||||||
| Name | CGC_name | nspa-3 | Person_evidence | WBPerson1983 | |||||
| Sequence_name | ZC412.7 | ||||||||
| Molecular_name | ZC412.7 | ||||||||
| ZC412.7.1 | |||||||||
| CE15223 | |||||||||
| Other_name | CELE_ZC412.7 | Accession_evidence | NDB | BX284605 | |||||
| Public_name | nspa-3 | ||||||||
| DB_info | Database | AceView | gene | 5P362 | |||||
| WormFlux | gene | WBGene00013888 | |||||||
| NDB | locus_tag | CELE_ZC412.7 | |||||||
| NCBI | gene | 191162 | |||||||
| RefSeq | protein | NM_074265.1 | |||||||
| TrEMBL | UniProtAcc | G5EDJ8 | |||||||
| UniProt_GCRP | UniProtAcc | G5EDJ8 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 26 May 2004 16:54:55 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of WS125 | ||
| 2 | 01 Apr 2005 11:59:21 | WBPerson2970 | Name_change | CGC_name | nspa-3 | ||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | nspa | ||||||||
| Allele (25) | |||||||||
| RNASeq_FPKM (74) | |||||||||
| Ortholog (11) | |||||||||
| Paralog | WBGene00012294 | Caenorhabditis elegans | From_analysis | Inparanoid_8 | |||||
| WormBase-Compara | |||||||||
| WBGene00013887 | Caenorhabditis elegans | From_analysis | Inparanoid_8 | ||||||
| WormBase-Compara | |||||||||
| WBGene00043187 | Caenorhabditis elegans | From_analysis | Inparanoid_8 | ||||||
| WBGene00044274 | Caenorhabditis elegans | From_analysis | Inparanoid_8 | ||||||
| WBGene00010377 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| WBGene00044271 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| WBGene00044272 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| Structured_description | Automated_description | Is affected by several genes including daf-16; daf-2; and sir-2.1 based on microarray and RNA-seq studies. Is affected by eight chemicals including multi-walled carbon nanotube; Rifampin; and allantoin based on RNA-seq and microarray studies. | Paper_evidence | WBPaper00065943 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | ZC412.7 | |||||||
| Corresponding_transcript | ZC412.7.1 | ||||||||
| Associated_feature | WBsf1002171 | ||||||||
| WBsf1020937 | |||||||||
| Experimental_info | RNAi_result | WBRNAi00058904 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00021689 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00054861 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00016241 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr1162342 | ||||||||
| Drives_construct | WBCnstr00029471 | ||||||||
| Construct_product | WBCnstr00029471 | ||||||||
| Microarray_results | SMD_ZC412.7 | ||||||||
| A_12_P117732 | |||||||||
| Aff_ZC412.7 | |||||||||
| GPL13394_WBGene00013888 | |||||||||
| GPL13914_ZC412.7 | |||||||||
| GPL19516_CGZ0055856 | |||||||||
| GPL21109_ZC412.7 | |||||||||
| GPL8673_H12D21_1P00046 | |||||||||
| GPL8673_ZC412_7P00046 | |||||||||
| Expression_cluster (64) | |||||||||
| Interaction (102) | |||||||||
| Map_info | Map | V | Position | 6.99311 | |||||
| Positive | Positive_clone | ZC412 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
