WormBase Tree Display for Gene: WBGene00014080
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WBGene00014080 | SMap | S_parent | Sequence | ZK792 | |||||
---|---|---|---|---|---|---|---|---|---|
Identity | Version | 2 | |||||||
Name | CGC_name | atg-4.2 | Person_evidence | WBPerson649 | |||||
Sequence_name | ZK792.8 | ||||||||
Molecular_name | ZK792.8 | ||||||||
ZK792.8.1 | |||||||||
CE24740 | |||||||||
Other_name | CELE_ZK792.8 | Accession_evidence | NDB | BX284604 | |||||
Public_name | atg-4.2 | ||||||||
DB_info | Database (12) | ||||||||
Species | Caenorhabditis elegans | ||||||||
History | Version_change | 1 | 26 May 2004 16:54:55 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of WS125 | ||
2 | 29 Feb 2008 11:29:00 | WBPerson2970 | Name_change | CGC_name | atg-4.2 | ||||
Status | Live | ||||||||
Gene_info | Biotype | SO:0001217 | |||||||
Gene_class | atg | ||||||||
Allele (47) | |||||||||
RNASeq_FPKM (74) | |||||||||
GO_annotation (11) | |||||||||
Contained_in_operon | CEOP4468 | ||||||||
Ortholog (36) | |||||||||
Paralog | WBGene00013595 | Caenorhabditis elegans | From_analysis | TreeFam | |||||
Panther | |||||||||
WormBase-Compara | |||||||||
Structured_description | Concise_description | atg-4.2 encodes a putative cysteine protease orthologous to theautophagic budding yeast protein Apg4p, and to human ATG4C (OMIM:611339)and ATG4D (OMIM:611340); ATG-4.2 is paralogous to ATG-4.1 and to humanATG4A and ATG4B; unlike C. elegans orthologs of other yeast autophagicproteins, ATG-4.2 is not required for normal dauer formation, and it hasno obvious functions in mass RNAi assays. | Paper_evidence | WBPaper00006070 | |||||
WBPaper00031504 | |||||||||
Curator_confirmed | WBPerson1843 | ||||||||
WBPerson567 | |||||||||
Date_last_updated | 24 Feb 2008 00:00:00 | ||||||||
Automated_description | Enables cysteine-type endopeptidase activity. Predicted to be involved in autophagy; protein transport; and proteolysis. Predicted to be located in cytoplasm. Expressed in embryonic cell; gonad; and oocyte. Is an ortholog of human ATG4D (autophagy related 4D cysteine peptidase). | Paper_evidence | WBPaper00065943 | ||||||
Curator_confirmed | WBPerson324 | ||||||||
WBPerson37462 | |||||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
Molecular_info | Corresponding_CDS | ZK792.8 | |||||||
Corresponding_transcript | ZK792.8.1 | ||||||||
Other_sequence | Oden_isotig09675 | ||||||||
Oden_isotig09674 | |||||||||
JI176296.1 | |||||||||
Oden_isotig09672 | |||||||||
Oden_isotig09673 | |||||||||
Tcol_isotig16551 | |||||||||
PPC09107_1 | |||||||||
Dviv_isotig13402 | |||||||||
FK800205.1 | |||||||||
Associated_feature | WBsf229193 | ||||||||
Experimental_info | RNAi_result | WBRNAi00080480 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00059721 | Inferred_automatically | RNAi_primary | |||||||
Expr_pattern | Expr12972 | ||||||||
Expr14339 | |||||||||
Expr1028569 | |||||||||
Expr1036303 | |||||||||
Expr1163141 | |||||||||
Expr2009493 | |||||||||
Expr2027730 | |||||||||
Drives_construct | WBCnstr00029327 | ||||||||
Construct_product | WBCnstr00029327 | ||||||||
Microarray_results (20) | |||||||||
Expression_cluster (90) | |||||||||
Interaction | WBInteraction000033454 | ||||||||
WBInteraction000039539 | |||||||||
WBInteraction000039541 | |||||||||
WBInteraction000039551 | |||||||||
WBInteraction000039555 | |||||||||
WBInteraction000039563 | |||||||||
WBInteraction000046443 | |||||||||
WBInteraction000046449 | |||||||||
WBInteraction000546680 | |||||||||
WBInteraction000560374 | |||||||||
Map_info | Map | IV | Position | 5.1408 | Error | 0.004808 | |||
Positive | Positive_clone | ZK792 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
Pseudo_map_position | |||||||||
Reference (13) | |||||||||
Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
Method | Gene |