WormBase Tree Display for Gene: WBGene00014232
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| WBGene00014232 | SMap | S_parent | Sequence | ZK1128 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 2 | |||||||
| Name | CGC_name | ttll-4 | Person_evidence | WBPerson625 | |||||
| Sequence_name | ZK1128.6 | ||||||||
| Molecular_name | ZK1128.6a | ||||||||
| ZK1128.6a.1 | |||||||||
| CE29940 | |||||||||
| ZK1128.6b | |||||||||
| CE38015 | |||||||||
| ZK1128.6b.1 | |||||||||
| ZK1128.6b.2 | |||||||||
| ZK1128.6b.3 | |||||||||
| Other_name | CELE_ZK1128.6 | Accession_evidence | NDB | BX284603 | |||||
| Public_name | ttll-4 | ||||||||
| DB_info | Database (11) | ||||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 26 May 2004 16:54:55 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of WS125 | ||
| 2 | 29 May 2007 08:52:01 | WBPerson2970 | Name_change | CGC_name | ttll-4 | ||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | ttll | ||||||||
| Allele (129) | |||||||||
| Strain | WBStrain00054961 | ||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation (16) | |||||||||
| Contained_in_operon | CEOP3657 | ||||||||
| Ortholog (36) | |||||||||
| Paralog | WBGene00008331 | Caenorhabditis elegans | From_analysis | TreeFam | |||||
| Panther | |||||||||
| WormBase-Compara | |||||||||
| WBGene00010630 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
| WormBase-Compara | |||||||||
| WBGene00019230 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
| Panther | |||||||||
| WormBase-Compara | |||||||||
| WBGene00044187 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
| Panther | |||||||||
| WormBase-Compara | |||||||||
| WBGene00008405 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| Structured_description | Concise_description | ttll-4 encodes, by alternative splicing, two isoforms of a putativetubulin polyglutamylase orthologous to human TTLL4; TTLL-4 has noobvious function in mass RNAi assays; by orthology, TTLL-4 is expected to initiate glutamyl chains rather than elongatingthem, to have broad substrate specificity, acting on both alpha- andbeta-tubulin, and to have multiple non-tubulin substrates such asnucleosome assembly proteins (NAPs). | Paper_evidence | WBPaper00029411 | |||||
| WBPaper00029412 | |||||||||
| WBPaper00029413 | |||||||||
| WBPaper00029414 | |||||||||
| WBPaper00029415 | |||||||||
| WBPaper00029416 | |||||||||
| Curator_confirmed | WBPerson567 | ||||||||
| Date_last_updated | 29 May 2007 00:00:00 | ||||||||
| Automated_description | Enables tubulin-glutamic acid ligase activity. Involved in response to hermaphrodite contact. Predicted to be located in cilium. Is an ortholog of human TTLL4 (tubulin tyrosine ligase like 4). | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | ZK1128.6a | |||||||
| ZK1128.6b | |||||||||
| Corresponding_CDS_history | ZK1128.6:wp68 | ||||||||
| Corresponding_transcript | ZK1128.6a.1 | ||||||||
| ZK1128.6b.1 | |||||||||
| ZK1128.6b.2 | |||||||||
| ZK1128.6b.3 | |||||||||
| Other_sequence (41) | |||||||||
| Associated_feature (11) | |||||||||
| Experimental_info | RNAi_result | WBRNAi00006418 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00103645 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00021824 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00059143 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00004395 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr1024085 | ||||||||
| Expr1036381 | |||||||||
| Expr1162567 | |||||||||
| Expr2017568 | |||||||||
| Expr2035707 | |||||||||
| Microarray_results (24) | |||||||||
| Expression_cluster (80) | |||||||||
| Interaction | WBInteraction000505324 | ||||||||
| WBInteraction000563342 | |||||||||
| WBInteraction000563346 | |||||||||
| WBInteraction000563347 | |||||||||
| WBInteraction000563348 | |||||||||
| Map_info | Map | III | Position | 1.89076 | Error | 0.011458 | |||
| Positive | Positive_clone | ZK1128 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Reference (20) | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
