WormBase Tree Display for Gene: WBGene00015347
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| WBGene00015347 | SMap | S_parent | Sequence | C02F5 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 2 | |||||||
| Name | CGC_name | cids-1 | Person_evidence | WBPerson71 | |||||
| Sequence_name | C02F5.4 | ||||||||
| Molecular_name | C02F5.4 | ||||||||
| C02F5.4.1 | |||||||||
| CE38771 | |||||||||
| Other_name | CELE_C02F5.4 | Accession_evidence | NDB | BX284603 | |||||
| Public_name | cids-1 | ||||||||
| DB_info | Database | AceView | gene | 3J335 | |||||
| WormQTL | gene | WBGene00015347 | |||||||
| WormFlux | gene | WBGene00015347 | |||||||
| NDB | locus_tag | CELE_C02F5.4 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00015347|UniProtKB=P34281 | |||||||
| family | PTHR12460 | ||||||||
| NCBI | gene | 176162 | |||||||
| RefSeq | protein | NM_066406.7 | |||||||
| SwissProt | UniProtAcc | P34281 | |||||||
| TREEFAM | TREEFAM_ID | TF320926 | |||||||
| UniProt_GCRP | UniProtAcc | P34281 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 28 May 2004 13:30:55 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of stlace from WS125 | ||
| 2 | 07 Jan 2008 15:11:50 | WBPerson2970 | Name_change | CGC_name | cids-1 | ||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | cids | ||||||||
| Allele (22) | |||||||||
| Strain | WBStrain00002813 | ||||||||
| WBStrain00036983 | |||||||||
| WBStrain00036996 | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00041320 | ||||||||
| 00041321 | |||||||||
| 00041322 | |||||||||
| 00041323 | |||||||||
| 00041324 | |||||||||
| Contained_in_operon | CEOP3496 | ||||||||
| Ortholog (34) | |||||||||
| Paralog | WBGene00009451 | Caenorhabditis elegans | From_analysis | TreeFam | |||||
| Panther | |||||||||
| WormBase-Compara | |||||||||
| WBGene00017004 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| Structured_description | Concise_description | cids-1 encodes a protein that contains a CTD (C-terminal domain of RNA Pol II)-interacting domain and that is orthologous to Saccharomyces cerevisiae RTT103; cids-1 was identified genetically as a suppressor of the SynMuv phenotype produced by lin-15AB(n765), a mutation that results in transposition of the 3'-end cleavage and polyadenylation signal of another gene into the third exon of lin-15B; qRT-PCR assays suggest that CIDS-1 plays a role in 3'-end cleavage. | Paper_evidence | WBPaper00032289 | |||||
| Curator_confirmed | WBPerson1843 | ||||||||
| Date_last_updated | 30 Sep 2009 00:00:00 | ||||||||
| Automated_description | Predicted to enable RNA polymerase II complex binding activity. Involved in mRNA 3'-end processing. Is an ortholog of human RPRD1A (regulation of nuclear pre-mRNA domain containing 1A). | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | C02F5.4 | |||||||
| Corresponding_CDS_history | C02F5.4:wp145 | ||||||||
| Corresponding_transcript | C02F5.4.1 | ||||||||
| Other_sequence | CRC02844_1 | ||||||||
| CBC08411_1 | |||||||||
| CJC08746_1 | |||||||||
| CR01956 | |||||||||
| Oden_isotig15723 | |||||||||
| Associated_feature | WBsf645399 | ||||||||
| WBsf659242 | |||||||||
| WBsf225377 | |||||||||
| Experimental_info | RNAi_result | WBRNAi00039454 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00005885 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00081944 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00081947 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00010013 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00085034 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00039453 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Chronogram1215 | ||||||||
| Expr5114 | |||||||||
| Expr1011564 | |||||||||
| Expr1036574 | |||||||||
| Expr1143564 | |||||||||
| Expr2010011 | |||||||||
| Expr2028252 | |||||||||
| Drives_construct | WBCnstr00003340 | ||||||||
| WBCnstr00028914 | |||||||||
| Construct_product | WBCnstr00028914 | ||||||||
| Microarray_results (19) | |||||||||
| Expression_cluster (102) | |||||||||
| Interaction (18) | |||||||||
| Map_info | Map | III | Position | -0.353659 | Error | 0.000294 | |||
| Positive | Positive_clone | C02F5 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00032289 | ||||||||
| WBPaper00032961 | |||||||||
| WBPaper00036363 | |||||||||
| WBPaper00038491 | |||||||||
| WBPaper00055090 | |||||||||
| WBPaper00065308 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
