WormBase Tree Display for Gene: WBGene00015350
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WBGene00015350 | SMap | S_parent | Sequence | C02F5 | ||
---|---|---|---|---|---|---|
Identity (6) | ||||||
Gene_info | Biotype | SO:0001217 | ||||
Gene_class | fbxl | |||||
Allele (65) | ||||||
Strain | WBStrain00037639 | |||||
RNASeq_FPKM (74) | ||||||
GO_annotation (15) | ||||||
Contained_in_operon | CEOP3488 | |||||
Ortholog (45) | ||||||
Paralog (22) | ||||||
Structured_description | Concise_description | fbxl-1 encodes the sole C. elegans leucine-rich repeat (LRR)-type F-box protein that is equally related to mammalian FBXL2 and FBXL20; fbxl-1(RNAi) results in animals with altered defecation rhythm and decreased dauer formation upon treatment with dauer pheromone (daumone); an fbxl-1 promoter::gfp fusion is expressed in the anterior and posterior regions of the worm, specifically around the amphids and anal sphincter, respectively. | Paper_evidence | WBPaper00012854 | ||
WBPaper00046873 | ||||||
Curator_confirmed | WBPerson1843 | |||||
WBPerson567 | ||||||
Date_last_updated | 02 Jun 2015 00:00:00 | |||||
Automated_description | Involved in several processes, including dauer entry; defecation rhythm; and regulation of defecation rhythm. Located in perikaryon and plasma membrane bounded cell projection. Is an ortholog of human FBXL2 (F-box and leucine rich repeat protein 2) and FBXL20 (F-box and leucine rich repeat protein 20). | Paper_evidence | WBPaper00065943 | |||
Curator_confirmed | WBPerson324 | |||||
WBPerson37462 | ||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | |||||
Date_last_updated | 29 Nov 2023 00:00:00 | |||||
Molecular_info | Corresponding_CDS | C02F5.7a | ||||
C02F5.7b | ||||||
Corresponding_transcript | C02F5.7a.1 | |||||
C02F5.7a.2 | ||||||
C02F5.7b.1 | ||||||
Other_sequence (28) | ||||||
Associated_feature | WBsf645397 | |||||
WBsf659241 | ||||||
WBsf993274 | ||||||
WBsf993275 | ||||||
WBsf1015376 | ||||||
WBsf225373 | ||||||
WBsf225374 | ||||||
WBsf225375 | ||||||
Experimental_info | RNAi_result (12) | |||||
Expr_pattern | Expr1019528 | |||||
Expr1036576 | ||||||
Expr1143567 | ||||||
Expr2011740 | ||||||
Expr2029978 | ||||||
Drives_construct | WBCnstr00028911 | |||||
Construct_product | WBCnstr00028911 | |||||
Microarray_results (35) | ||||||
Expression_cluster (188) | ||||||
Interaction (96) | ||||||
Map_info | Map | III | Position | -0.356302 | ||
Positive | Positive_clone | C02F5 | Inferred_automatically | From sequence, transcript, pseudogene data | ||
Pseudo_map_position | ||||||
Reference | WBPaper00012854 | |||||
WBPaper00034662 | ||||||
WBPaper00038491 | ||||||
WBPaper00046873 | ||||||
WBPaper00055090 | ||||||
WBPaper00055787 | ||||||
WBPaper00064447 | ||||||
Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | ||||
Method | Gene |