WormBase Tree Display for Gene: WBGene00015460
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| WBGene00015460 | SMap | S_parent | Sequence | C05C8 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 1 | |||||||
| Name | Sequence_name | C05C8.1 | |||||||
| Molecular_name | C05C8.1a | ||||||||
| C05C8.1a.1 | |||||||||
| CE29480 | |||||||||
| C05C8.1b | |||||||||
| CE41192 | |||||||||
| C05C8.1b.1 | |||||||||
| Other_name | CELE_C05C8.1 | Accession_evidence | NDB | BX284605 | |||||
| Public_name | C05C8.1 | ||||||||
| DB_info | Database | AceView | gene | 5H721 | |||||
| WormQTL | gene | WBGene00015460 | |||||||
| WormFlux | gene | WBGene00015460 | |||||||
| NDB | locus_tag | CELE_C05C8.1 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00015460|UniProtKB=O16314 | |||||||
| family | PTHR13382 | ||||||||
| NCBI | gene | 179119 | |||||||
| RefSeq | protein | NM_001129368.5 | |||||||
| NM_072441.7 | |||||||||
| TREEFAM | TREEFAM_ID | TF315274 | |||||||
| TrEMBL | UniProtAcc | A6PVA5 | |||||||
| O16314 | |||||||||
| UniProt_GCRP | UniProtAcc | O16314 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 28 May 2004 13:30:56 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of stlace from WS125 | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Allele (31) | |||||||||
| Strain | WBStrain00003578 | ||||||||
| RNASeq_FPKM (74) | |||||||||
| Contained_in_operon | CEOP5152 | ||||||||
| Ortholog (41) | |||||||||
| Paralog | WBGene00021815 | Caenorhabditis elegans | From_analysis | TreeFam | |||||
| WBGene00050937 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
| Panther | |||||||||
| WormBase-Compara | |||||||||
| Structured_description | Automated_description | Enriched in NSM; coelomocyte; dopaminergic neurons; germ line; and germline precursor cell based on tiling array and RNA-seq studies. Is affected by several genes including daf-16; daf-2; and daf-12 based on microarray; tiling array; RNA-seq; and proteomic studies. Is affected by five chemicals including rotenone; paraquat; and Cry5B based on RNA-seq and microarray studies. Is predicted to encode a protein with the following domains: Leucine-rich repeat domain superfamily and Leucine-rich repeat, cysteine-containing subtype. Is an ortholog of human DMAC2L (distal membrane arm assembly component 2 like). | Paper_evidence | WBPaper00065943 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | C05C8.1a | |||||||
| C05C8.1b | |||||||||
| Corresponding_CDS_history | C05C8.1:wp177 | ||||||||
| Corresponding_transcript | C05C8.1a.1 | ||||||||
| C05C8.1b.1 | |||||||||
| Other_sequence (16) | |||||||||
| Associated_feature | WBsf1000455 | ||||||||
| WBsf231962 | |||||||||
| Experimental_info | RNAi_result | WBRNAi00039705 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00033629 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Chronogram827 | ||||||||
| Expr5161 | |||||||||
| Expr1021892 | |||||||||
| Expr1036606 | |||||||||
| Expr1143805 | |||||||||
| Expr2000451 | |||||||||
| Expr2018674 | |||||||||
| Drives_construct | WBCnstr00004030 | ||||||||
| WBCnstr00028831 | |||||||||
| Construct_product | WBCnstr00028831 | ||||||||
| Microarray_results (20) | |||||||||
| Expression_cluster (98) | |||||||||
| SAGE_tag | SAGE:tattcaagac | Strand | Antisense | ||||||
| SAGE:taggaggtca | Strand | Sense | |||||||
| Unambiguously_mapped | |||||||||
| SAGE:taggaggtcacctgaaa | Strand | Sense | |||||||
| Unambiguously_mapped | |||||||||
| SAGE:aagattctta | Strand | Antisense | |||||||
| SAGE:aagattcttacatttga | Strand | Antisense | |||||||
| Interaction (21) | |||||||||
| Map_info | Positive | Positive_clone | C05C8 | Inferred_automatically | From sequence, transcript, pseudogene data | ||||
| Interpolated_map_position | V | 0.645875 | |||||||
| Reference | WBPaper00038491 | ||||||||
| WBPaper00055090 | |||||||||
| Method | Gene |
