WormBase Tree Display for Gene: WBGene00015468
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| WBGene00015468 | SMap | S_parent | Sequence | C05D2 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 2 | |||||||
| Name | CGC_name | madf-11 | Person_evidence | WBPerson260 | |||||
| WBPerson1997 | |||||||||
| Sequence_name | C05D2.6 | ||||||||
| Molecular_name | C05D2.6a | ||||||||
| C05D2.6a.1 | |||||||||
| CE32115 | |||||||||
| C05D2.6b | |||||||||
| CE38996 | |||||||||
| C05D2.6b.1 | |||||||||
| Other_name | CELE_C05D2.6 | Accession_evidence | NDB | BX284603 | |||||
| Public_name | madf-11 | ||||||||
| DB_info | Database | AceView | gene | 3G690 | |||||
| WormQTL | gene | WBGene00015468 | |||||||
| WormFlux | gene | WBGene00015468 | |||||||
| NDB | locus_tag | CELE_C05D2.6 | |||||||
| NCBI | gene | 175775 | |||||||
| RefSeq | protein | NM_001038259.4 | |||||||
| NM_001038258.5 | |||||||||
| TrEMBL | UniProtAcc | O45133 | |||||||
| H2KYG5 | |||||||||
| UniProt_GCRP | UniProtAcc | O45133 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 28 May 2004 13:30:56 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of stlace from WS125 | ||
| 2 | 17 May 2011 14:01:04 | WBPerson2970 | Name_change | CGC_name | madf-11 | ||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | madf | ||||||||
| Allele (39) | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00021589 | ||||||||
| 00021590 | |||||||||
| 00021591 | |||||||||
| Contained_in_operon | CEOP3312 | ||||||||
| Ortholog (18) | |||||||||
| Structured_description | Concise_description | C05D2.6 encodes an unfamiliar protein, with no known non-nematode homologs, that specifically binds GOA-1 in yeast two-hybrid assays; C05D2.6 is expressed in several head and tail neurons, pharyngeal muscle, intestine, distal tip cell of the gonad, with weak expression in the ventral nerve cord; C05D2.6 is required for fertility in RNAi assays, with a phenotype of either sterile progeny or reduced brood size for C05D2.6(RNAi) in an rrf-3 mutant background. | Paper_evidence | WBPaper00006194 | |||||
| Curator_confirmed | WBPerson567 | ||||||||
| Date_last_updated | 17 Jun 2004 00:00:00 | ||||||||
| Automated_description | Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to be located in nucleus. Predicted to be part of transcription regulator complex. Expressed in hermaphrodite distal tip cell; intestine; neurons; pharyngeal muscle cell; and ventral nerve cord. | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | C05D2.6a | |||||||
| C05D2.6b | |||||||||
| Corresponding_CDS_history | C05D2.6:wp88 | ||||||||
| C05D2.6:wp147 | |||||||||
| Corresponding_transcript | C05D2.6a.1 | ||||||||
| C05D2.6b.1 | |||||||||
| Other_sequence | CBC12597_1 | ||||||||
| CRC00630_1 | |||||||||
| CRC05365_1 | |||||||||
| FD514516.1 | |||||||||
| CBC11793_1 | |||||||||
| CR10788 | |||||||||
| CSC02324_1 | |||||||||
| CR01978 | |||||||||
| Associated_feature | WBsf651061 | ||||||||
| WBsf651062 | |||||||||
| WBsf666915 | |||||||||
| WBsf981482 | |||||||||
| WBsf992450 | |||||||||
| WBsf1014914 | |||||||||
| WBsf226706 | |||||||||
| WBsf226707 | |||||||||
| WBsf226708 | |||||||||
| Experimental_info | RNAi_result | WBRNAi00063372 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00039755 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00063360 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr2752 | ||||||||
| Expr1028903 | |||||||||
| Expr1036612 | |||||||||
| Expr1143845 | |||||||||
| Expr2013337 | |||||||||
| Expr2031569 | |||||||||
| Drives_construct | WBCnstr00010932 | ||||||||
| WBCnstr00028823 | |||||||||
| Construct_product | WBCnstr00010932 | ||||||||
| WBCnstr00028823 | |||||||||
| Microarray_results (20) | |||||||||
| Expression_cluster (90) | |||||||||
| Interaction | WBInteraction000235463 | ||||||||
| WBInteraction000296753 | |||||||||
| WBInteraction000380500 | |||||||||
| WBInteraction000380931 | |||||||||
| WBInteraction000410642 | |||||||||
| WBInteraction000445481 | |||||||||
| WBInteraction000450465 | |||||||||
| WBInteraction000542830 | |||||||||
| WBInteraction000575419 | |||||||||
| Map_info | Map | III | Position | -1.50658 | Error | 0.00518 | |||
| Positive | Positive_clone | C05D2 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00053597 | ||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
