WormBase Tree Display for Gene: WBGene00015609
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WBGene00015609 | SMap | S_parent | Sequence | C08F1 | |||
---|---|---|---|---|---|---|---|
Identity | Version | 2 | |||||
Name | CGC_name | math-4 | Person_evidence | WBPerson655 | |||
Sequence_name | C08F1.5 | ||||||
Molecular_name | C08F1.5 | ||||||
C08F1.5.1 | |||||||
CE46867 | |||||||
Other_name | CELE_C08F1.5 | Accession_evidence | NDB | BX284602 | |||
Public_name | math-4 | ||||||
DB_info | Database | WormQTL | gene | WBGene00015609 | |||
SignaLink | protein | WBGene00015609 | |||||
WormFlux | gene | WBGene00015609 | |||||
NDB | locus_tag | CELE_C08F1.5 | |||||
Panther | gene | CAEEL|WormBase=WBGene00015609|UniProtKB=Q2V074 | |||||
family | PTHR46308 | ||||||
NCBI | gene | 173548 | |||||
RefSeq | protein | NM_001047270.4 | |||||
TrEMBL | UniProtAcc | H2KYK6 | |||||
UniProt_GCRP | UniProtAcc | H2KYK6 | |||||
Species | Caenorhabditis elegans | ||||||
History | Version_change (2) | ||||||
Status | Live | ||||||
Gene_info | Biotype | SO:0001217 | |||||
Gene_class | math | ||||||
Allele (250) | |||||||
RNASeq_FPKM (74) | |||||||
Ortholog | WBGene00154588 | Caenorhabditis brenneri | From_analysis | TreeFam | |||
WBGene00143314 | Caenorhabditis brenneri | From_analysis | WormBase-Compara | ||||
Csp11.Scaffold630.g19300 | Caenorhabditis tropicalis | From_analysis | WormBase-Compara | ||||
Csp11.Scaffold630.g19304 | Caenorhabditis tropicalis | From_analysis | WormBase-Compara | ||||
chrII_pilon.g3473 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||
Paralog (85) | |||||||
Structured_description | Automated_description | Enriched in body wall muscle cell from MS lineage; head mesodermal cell; intestine; and rectal muscle based on tiling array; RNA-seq; and single-cell RNA-seq studies. Is affected by several genes including daf-16; daf-2; and skn-1 based on RNA-seq and microarray studies. Is affected by twelve chemicals including hydrogen sulfide; Zidovudine; and Psoralens based on microarray and RNA-seq studies. Is predicted to encode a protein with the following domains: MATH/TRAF domain; MATH domain; and TRAF-like. | Paper_evidence | WBPaper00065943 | |||
Curator_confirmed | WBPerson324 | ||||||
WBPerson37462 | |||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||
Date_last_updated | 29 Nov 2023 00:00:00 | ||||||
Molecular_info | Corresponding_CDS | C08F1.5 | |||||
Corresponding_CDS_history | C08F1.5:wp84 | ||||||
C08F1.5:wp149 | |||||||
C08F1.5:wp152 | |||||||
C08F1.5a:wp229 | |||||||
C08F1.5b:wp229 | |||||||
C08F1.5b:wp274 | |||||||
Corresponding_transcript | C08F1.5.1 | ||||||
Associated_feature | WBsf649892 | ||||||
WBsf649893 | |||||||
WBsf665366 | |||||||
WBsf986811 | |||||||
WBsf986812 | |||||||
WBsf1011628 | |||||||
WBsf1011629 | |||||||
WBsf1011630 | |||||||
WBsf222721 | |||||||
Experimental_info | RNAi_result | WBRNAi00010461 | Inferred_automatically | RNAi_primary | |||
WBRNAi00066641 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00040108 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00000751 | Inferred_automatically | RNAi_primary | |||||
Expr_pattern | Expr1019259 | ||||||
Expr1036681 | |||||||
Expr1144182 | |||||||
Expr2013421 | |||||||
Expr2031655 | |||||||
Drives_construct | WBCnstr00028715 | ||||||
Construct_product | WBCnstr00028715 | ||||||
Microarray_results (17) | |||||||
Expression_cluster (149) | |||||||
Interaction (16) | |||||||
Map_info | Map | II | Position | -14.4278 | Error | 0.005017 | |
Positive | Positive_clone | C08F1 | Inferred_automatically | From sequence, transcript, pseudogene data | |||
Pseudo_map_position | |||||||
Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||
Method | Gene |