WormBase Tree Display for Gene: WBGene00015678
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| WBGene00015678 | SMap | S_parent | Sequence | C10F3 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 2 | |||||||
| Name | CGC_name | mcp-1 | Paper_evidence | WBPaper00038353 | |||||
| Person_evidence | WBPerson111 | ||||||||
| WBPerson12255 | |||||||||
| WBPerson13034 | |||||||||
| Sequence_name | C10F3.4 | ||||||||
| Molecular_name | C10F3.4a | ||||||||
| C10F3.4a.1 | |||||||||
| CE30723 | |||||||||
| C10F3.4b | |||||||||
| CE37609 | |||||||||
| C10F3.4a.2 | |||||||||
| C10F3.4b.1 | |||||||||
| Other_name | CELE_C10F3.4 | Accession_evidence | NDB | BX284605 | |||||
| Public_name | mcp-1 | ||||||||
| DB_info | Database (12) | ||||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 28 May 2004 13:30:56 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of stlace from WS125 | ||
| 2 | 17 May 2011 14:01:04 | WBPerson2970 | Name_change | CGC_name | mcp-1 | ||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | mcp | ||||||||
| Allele (105) | |||||||||
| Strain | WBStrain00033903 | ||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation (18) | |||||||||
| Ortholog (34) | |||||||||
| Structured_description | Concise_description | mcp-1 encodes a GDP-D-glucose phosphorylase with similarity to the human protein encoded by C15orf58 and Arabidopsis VTC2; when expressed in vitro, MCP-1 exhibits GDP-D-glucose phosphorylase activity and animals lacking mcp-1 activity accumulate GDP-D-glucose; an MCP-1::GFP reporter fusion protein is expressed in embryos and larvae in neurons, the spermatheca, and the anterior hypodermis and localizes to the cytoplasm. | Paper_evidence | WBPaper00028951 | |||||
| WBPaper00038353 | |||||||||
| Curator_confirmed | WBPerson1843 | ||||||||
| Date_last_updated | 28 Apr 2011 00:00:00 | ||||||||
| Automated_description | Enables GDP-D-glucose phosphorylase activity. Involved in glucose metabolic process. Located in cytoplasm. Expressed in anterior hypodermis; nervous system; reproductive system; and spermatheca. Is an ortholog of human GDPGP1 (GDP-D-glucose phosphorylase 1). | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | C10F3.4a | |||||||
| C10F3.4b | |||||||||
| Corresponding_CDS_history | C10F3.4:wp131 | ||||||||
| Corresponding_transcript | C10F3.4a.1 | ||||||||
| C10F3.4a.2 | |||||||||
| C10F3.4b.1 | |||||||||
| Other_sequence (65) | |||||||||
| Associated_feature (12) | |||||||||
| Experimental_info | RNAi_result (12) | ||||||||
| Expr_pattern | Expr9288 | ||||||||
| Expr14943 | |||||||||
| Expr1015058 | |||||||||
| Expr1036710 | |||||||||
| Expr1144377 | |||||||||
| Expr2013455 | |||||||||
| Expr2031689 | |||||||||
| Drives_construct | WBCnstr00009295 | ||||||||
| WBCnstr00013877 | |||||||||
| WBCnstr00028661 | |||||||||
| WBCnstr00041812 | |||||||||
| Construct_product | WBCnstr00009019 | ||||||||
| WBCnstr00009020 | |||||||||
| WBCnstr00013877 | |||||||||
| WBCnstr00028661 | |||||||||
| Microarray_results (25) | |||||||||
| Expression_cluster (124) | |||||||||
| Interaction | WBInteraction000390990 | ||||||||
| WBInteraction000399380 | |||||||||
| WBInteraction000399473 | |||||||||
| WBInteraction000452688 | |||||||||
| Map_info | Map | V | Position | -0.641489 | Error | 0.024491 | |||
| Positive | Positive_clone | C10F3 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00028951 | ||||||||
| WBPaper00035114 | |||||||||
| WBPaper00038353 | |||||||||
| WBPaper00038491 | |||||||||
| WBPaper00055090 | |||||||||
| WBPaper00057341 | |||||||||
| WBPaper00059169 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
