WormBase Tree Display for Gene: WBGene00015934
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WBGene00015934 | SMap | S_parent | Sequence | C17H12 | |||||
---|---|---|---|---|---|---|---|---|---|
Identity | Version | 2 | |||||||
Name | CGC_name | ceh-48 | Person_evidence | WBPerson83 | |||||
WBPerson1997 | |||||||||
Sequence_name | C17H12.9 | ||||||||
Molecular_name | C17H12.9 | ||||||||
C17H12.9.1 | |||||||||
CE16869 | |||||||||
Other_name | CELE_C17H12.9 | Accession_evidence | NDB | BX284604 | |||||
Public_name | ceh-48 | ||||||||
DB_info | Database (11) | ||||||||
Species | Caenorhabditis elegans | ||||||||
History | Version_change | 1 | 28 May 2004 13:30:56 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of stlace from WS125 | ||
2 | 18 Jul 2005 13:34:00 | WBPerson2970 | Name_change | CGC_name | ceh-48 | ||||
Status | Live | ||||||||
Gene_info | Biotype | SO:0001217 | |||||||
Gene_class | ceh | ||||||||
Allele (23) | |||||||||
Strain | WBStrain00001387 | ||||||||
WBStrain00001488 | |||||||||
WBStrain00031995 | |||||||||
WBStrain00051839 | |||||||||
WBStrain00055165 | |||||||||
WBStrain00055018 | |||||||||
WBStrain00055004 | |||||||||
RNASeq_FPKM (74) | |||||||||
GO_annotation (12) | |||||||||
Ortholog (50) | |||||||||
Paralog | WBGene00000444 | Caenorhabditis elegans | From_analysis | Panther | |||||
WormBase-Compara | |||||||||
WBGene00000459 | Caenorhabditis elegans | From_analysis | Panther | ||||||
WormBase-Compara | |||||||||
WBGene00000460 | Caenorhabditis elegans | From_analysis | Panther | ||||||
WormBase-Compara | |||||||||
WBGene00017538 | Caenorhabditis elegans | From_analysis | Panther | ||||||
WormBase-Compara | |||||||||
Structured_description | Concise_description | ceh-48 encodes a ONECUT class CUT homeobox protein with a single N-terminal cut domain; the cut domain may be a compact DNA-binding domain composed of alpha helices; CEH-48 is strongly affiliated with, and may be orthologous to, Drosophila ONECUT and mammalian HNF6 proteins; ceh-48 has no obvious function in mass RNAi assays. | Paper_evidence | WBPaper00005164 | |||||
WBPaper00005654 | |||||||||
Person_evidence | WBPerson83 | ||||||||
Curator_confirmed | WBPerson13481 | ||||||||
WBPerson1843 | |||||||||
Date_last_updated | 16 Mar 2007 00:00:00 | ||||||||
Automated_description | Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to be located in nucleus. Expressed in head; neurons; spermathecal-uterine junction; ventral nerve cord; and vulva. Is an ortholog of human ONECUT1 (one cut homeobox 1); ONECUT2 (one cut homeobox 2); and ONECUT3 (one cut homeobox 3). | Paper_evidence | WBPaper00065943 | ||||||
Curator_confirmed | WBPerson324 | ||||||||
WBPerson37462 | |||||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
Molecular_info | Corresponding_CDS | C17H12.9 | |||||||
Corresponding_transcript | C17H12.9.1 | ||||||||
Other_sequence (20) | |||||||||
Associated_feature | WBsf978680 | ||||||||
WBsf228464 | |||||||||
WBsf228465 | |||||||||
WBsf228466 | |||||||||
WBsf228467 | |||||||||
Transcription_factor | WBTranscriptionFactor000050 | ||||||||
Experimental_info | RNAi_result | WBRNAi00029040 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00010951 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00040871 | Inferred_automatically | RNAi_primary | |||||||
Expr_pattern (13) | |||||||||
Drives_construct | WBCnstr00002278 | ||||||||
WBCnstr00004286 | |||||||||
WBCnstr00011042 | |||||||||
WBCnstr00012581 | |||||||||
WBCnstr00028443 | |||||||||
Construct_product (2) | |||||||||
Microarray_results (19) | |||||||||
Expression_cluster (203) | |||||||||
Interaction (26) | |||||||||
Map_info | Map | IV | Position | 3.23912 | Error | 0.000916 | |||
Positive | Positive_clone | C17H12 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
Mapping_data | Multi_point | 5424 | |||||||
4478 | |||||||||
4752 | |||||||||
Pseudo_map_position | |||||||||
Reference (12) | |||||||||
Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
Method | Gene |