WormBase Tree Display for Gene: WBGene00016188
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| WBGene00016188 | SMap | S_parent | Sequence | C28G1 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 2 | |||||||
| Name | CGC_name | sec-15 | Person_evidence | WBPerson297 | |||||
| Sequence_name | C28G1.3 | ||||||||
| Molecular_name | C28G1.3 | ||||||||
| C28G1.3.1 | |||||||||
| CE37614 | |||||||||
| Other_name | CELE_C28G1.3 | Accession_evidence | NDB | BX284606 | |||||
| Public_name | sec-15 | ||||||||
| DB_info | Database (11) | ||||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 28 May 2004 13:30:57 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of stlace from WS125 | ||
| 2 | 03 Dec 2007 17:16:59 | WBPerson2970 | Name_change | CGC_name | sec-15 | ||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | sec | ||||||||
| Allele (54) | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00060837 | ||||||||
| 00060838 | |||||||||
| 00060839 | |||||||||
| 00060840 | |||||||||
| 00060841 | |||||||||
| 00060842 | |||||||||
| 00121869 | |||||||||
| 00121870 | |||||||||
| Ortholog (47) | |||||||||
| Structured_description | Automated_description | Predicted to be involved in Golgi to plasma membrane transport and exocytosis. Predicted to be part of exocyst. Expressed in embryonic cell; excretory canal; and hypodermis. Human ortholog(s) of this gene implicated in spondyloepimetaphyseal dysplasia with joint laxity type 3. Is an ortholog of human EXOC6B (exocyst complex component 6B). | Paper_evidence | WBPaper00065943 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Disease_info | Potential_model | DOID:0112200 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:17085) | ||||
| Molecular_info | Corresponding_CDS | C28G1.3 | |||||||
| Corresponding_CDS_history | C28G1.3:wp133 | ||||||||
| Corresponding_transcript | C28G1.3.1 | ||||||||
| Other_sequence (38) | |||||||||
| Associated_feature | WBsf654241 | ||||||||
| WBsf670024 | |||||||||
| WBsf670862 | |||||||||
| WBsf982217 | |||||||||
| WBsf1006257 | |||||||||
| WBsf237727 | |||||||||
| WBsf237728 | |||||||||
| Experimental_info | RNAi_result | WBRNAi00076174 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00090863 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00081457 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00041421 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00081465 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00011307 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr11915 | ||||||||
| Expr12503 | |||||||||
| Expr1011228 | |||||||||
| Expr1036927 | |||||||||
| Expr1145451 | |||||||||
| Expr2015709 | |||||||||
| Expr2033941 | |||||||||
| Drives_construct | WBCnstr00019554 | ||||||||
| WBCnstr00021268 | |||||||||
| WBCnstr00028260 | |||||||||
| Construct_product | WBCnstr00019554 | ||||||||
| WBCnstr00021268 | |||||||||
| WBCnstr00028260 | |||||||||
| Microarray_results (17) | |||||||||
| Expression_cluster (102) | |||||||||
| Interaction (79) | |||||||||
| Map_info | Map | X | Position | 0.419637 | Error | 0.002936 | |||
| Positive | Positive_clone | C28G1 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00031185 | ||||||||
| WBPaper00038491 | |||||||||
| WBPaper00038584 | |||||||||
| WBPaper00042952 | |||||||||
| WBPaper00046645 | |||||||||
| WBPaper00048680 | |||||||||
| WBPaper00052149 | |||||||||
| WBPaper00055090 | |||||||||
| WBPaper00063174 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
