WormBase Tree Display for Gene: WBGene00016200
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| WBGene00016200 | SMap | S_parent | Sequence | C28H8 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 2 | |||||||
| Name | CGC_name | dpff-1 | Person_evidence | WBPerson260 | |||||
| Sequence_name | C28H8.9 | ||||||||
| Molecular_name | C28H8.9a | ||||||||
| C28H8.9a.1 | |||||||||
| CE06896 | |||||||||
| C28H8.9b | |||||||||
| CE32813 | |||||||||
| C28H8.9c | |||||||||
| CE41615 | |||||||||
| C28H8.9b.1 | |||||||||
| C28H8.9c.1 | |||||||||
| Other_name | CELE_C28H8.9 | Accession_evidence | NDB | BX284603 | |||||
| Public_name | dpff-1 | ||||||||
| DB_info | Database (11) | ||||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 28 May 2004 13:30:57 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of stlace from WS125 | ||
| 2 | 14 Oct 2011 15:24:19 | WBPerson2970 | Name_change | CGC_name | dpff-1 | ||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | dpff | ||||||||
| Allele (42) | |||||||||
| Strain | WBStrain00034996 | ||||||||
| WBStrain00034997 | |||||||||
| WBStrain00054717 | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation (12) | |||||||||
| Ortholog (45) | |||||||||
| Paralog | WBGene00007029 | Caenorhabditis elegans | From_analysis | Panther | |||||
| WormBase-Compara | |||||||||
| WBGene00007914 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| WBGene00018013 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
| Panther | |||||||||
| WormBase-Compara | |||||||||
| WBGene00016200 | Caenorhabditis elegans | From_analysis | Inparanoid_8 | ||||||
| WBGene00045419 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| WBGene00010537 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| Structured_description | Automated_description | Predicted to enable metal ion binding activity. Involved in apoptotic process; meiotic cell cycle; and response to heat. Located in nucleus. Expressed widely. Used to study alcohol use disorder. Human ortholog(s) of this gene implicated in Coffin-Siris syndrome 7. Is an ortholog of human DPF2 (double PHD fingers 2) and DPF3 (double PHD fingers 3). | Paper_evidence | WBPaper00065943 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Disease_info | Experimental_model | DOID:1574 | Homo sapiens | Paper_evidence | WBPaper00046494 | ||||
| Curator_confirmed | WBPerson324 | ||||||||
| Date_last_updated | 20 May 2019 00:00:00 | ||||||||
| Potential_model | DOID:0112369 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:9964) | |||||
| Models_disease_asserted | WBDOannot00000673 | ||||||||
| Molecular_info | Corresponding_CDS | C28H8.9a | |||||||
| C28H8.9b | |||||||||
| C28H8.9c | |||||||||
| Corresponding_transcript | C28H8.9a.1 | ||||||||
| C28H8.9b.1 | |||||||||
| C28H8.9c.1 | |||||||||
| Other_sequence (48) | |||||||||
| Associated_feature | WBsf651084 | ||||||||
| WBsf992568 | |||||||||
| WBsf992569 | |||||||||
| WBsf992570 | |||||||||
| WBsf992571 | |||||||||
| WBsf1014978 | |||||||||
| WBsf1014979 | |||||||||
| Transcription_factor | WBTranscriptionFactor000660 | ||||||||
| Experimental_info | RNAi_result | WBRNAi00005310 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00029308 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00011317 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00113485 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00041436 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00115785 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr13521 | ||||||||
| Expr1016807 | |||||||||
| Expr1036933 | |||||||||
| Expr1145465 | |||||||||
| Expr1200281 | |||||||||
| Expr1200282 | |||||||||
| Expr2011046 | |||||||||
| Expr2029283 | |||||||||
| Drives_construct | WBCnstr00028250 | ||||||||
| Construct_product | WBCnstr00016602 | ||||||||
| WBCnstr00021804 | |||||||||
| WBCnstr00028250 | |||||||||
| Microarray_results (29) | |||||||||
| Expression_cluster (85) | |||||||||
| Interaction (37) | |||||||||
| Map_info | Map | III | Position | -1.43608 | Error | 0.000668 | |||
| Positive | Positive_clone | C28H8 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00038491 | ||||||||
| WBPaper00043688 | |||||||||
| WBPaper00046494 | |||||||||
| WBPaper00053111 | |||||||||
| WBPaper00055090 | |||||||||
| WBPaper00056971 | |||||||||
| WBPaper00061738 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
