WormBase Tree Display for Gene: WBGene00016258
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| WBGene00016258 | SMap | S_parent | Sequence | C30F8 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 2 | |||||||
| Name | CGC_name | vha-16 | |||||||
| Sequence_name | C30F8.2 | ||||||||
| Molecular_name | C30F8.2 | ||||||||
| C30F8.2.1 | |||||||||
| CE29684 | |||||||||
| C30F8.2.2 | |||||||||
| C30F8.2.3 | |||||||||
| Other_name | C30F8.a | Curator_confirmed | WBPerson1983 | ||||||
| Remark | Old cosmid naming mapped via unique overlapping PCR_product on CDSs | ||||||||
| C30F8.b | Curator_confirmed | WBPerson1983 | |||||||
| Remark | Old cosmid naming mapped via unique overlapping PCR_product on CDSs | ||||||||
| CELE_C30F8.2 | Accession_evidence | NDB | BX284601 | ||||||
| Public_name | vha-16 | ||||||||
| DB_info | Database | AceView | gene | 1F648 | |||||
| WormQTL | gene | WBGene00016258 | |||||||
| WormFlux | gene | WBGene00016258 | |||||||
| NDB | locus_tag | CELE_C30F8.2 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00016258|UniProtKB=Q95YD5 | |||||||
| family | PTHR11028 | ||||||||
| NCBI | gene | 172134 | |||||||
| RefSeq | protein | NM_059114.8 | |||||||
| TREEFAM | TREEFAM_ID | TF300857 | |||||||
| TrEMBL | UniProtAcc | Q95YD5 | |||||||
| UniProt_GCRP | UniProtAcc | Q95YD5 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 28 May 2004 13:30:57 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of stlace from WS125 | ||
| 2 | 05 Jul 2004 16:14:23 | WBPerson1971 | Name_change | CGC_name | vha-16 | ||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | vha | ||||||||
| Allele (28) | |||||||||
| Strain | WBStrain00036908 | ||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation (11) | |||||||||
| Ortholog (39) | |||||||||
| Structured_description | Concise_description | vha-16 encodes an an ortholog of subunit d of the membrane-bound (V0)domain of vacuolar proton-translocating ATPase (V-ATPase); VHA-16 ispredicted to mechanically anchor the V-ATPase cytosolic rotor (stalk) tothe membrane, while also providing a hub for the V-ATPase transmembranerotor; vha-16 is expressed in diverse tissues (e.g., excretory cell,pharynx, intestine, hypodermis, and neurons). | Paper_evidence | WBPaper00006525 | |||||
| WBPaper00026649 | |||||||||
| WBPaper00028773 | |||||||||
| WBPaper00028774 | |||||||||
| WBPaper00028775 | |||||||||
| Curator_confirmed | WBPerson567 | ||||||||
| Date_last_updated | 19 Nov 2006 00:00:00 | ||||||||
| Automated_description | Predicted to enable proton-transporting ATPase activity, rotational mechanism. Predicted to be involved in vacuolar acidification and vacuolar transport. Predicted to be located in early endosome. Predicted to be part of plasma membrane proton-transporting V-type ATPase complex and vacuolar proton-transporting V-type ATPase complex. Expressed in head and tail. Is an ortholog of human ATP6V0D1 (ATPase H+ transporting V0 subunit d1). | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | C30F8.2 | |||||||
| Corresponding_transcript | C30F8.2.1 | ||||||||
| C30F8.2.2 | |||||||||
| C30F8.2.3 | |||||||||
| Other_sequence (101) | |||||||||
| Associated_feature (12) | |||||||||
| Experimental_info | RNAi_result | WBRNAi00106553 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00075413 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00075422 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00117176 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00041556 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00085557 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00029362 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Chronogram2064 | ||||||||
| Expr5390 | |||||||||
| Expr1027378 | |||||||||
| Expr1036953 | |||||||||
| Expr1145576 | |||||||||
| Expr2017982 | |||||||||
| Expr2036118 | |||||||||
| Drives_construct | WBCnstr00002112 | ||||||||
| WBCnstr00028211 | |||||||||
| Construct_product | WBCnstr00028211 | ||||||||
| Microarray_results (20) | |||||||||
| Expression_cluster (108) | |||||||||
| Interaction (77) | |||||||||
| Map_info | Map | I | Position | -0.42042 | Error | 0.00039 | |||
| Positive | Positive_clone | C30F8 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00038491 | ||||||||
| WBPaper00055090 | |||||||||
| WBPaper00058870 | |||||||||
| WBPaper00059755 | |||||||||
| WBPaper00062277 | |||||||||
| WBPaper00064339 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
