WormBase Tree Display for Gene: WBGene00016375
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WBGene00016375 | SMap | S_parent | Sequence | C33H5 | |||
---|---|---|---|---|---|---|---|
Identity | Version | 2 | |||||
Name | CGC_name | rpap-3 | Person_evidence | WBPerson3828 | |||
Sequence_name | C33H5.8 | ||||||
Molecular_name | C33H5.8 | ||||||
C33H5.8.1 | |||||||
CE04151 | |||||||
Other_name | CELE_C33H5.8 | Accession_evidence | NDB | BX284604 | |||
Public_name | rpap-3 | ||||||
DB_info | Database | AceView | gene | 4I542 | |||
WormQTL | gene | WBGene00016375 | |||||
WormFlux | gene | WBGene00016375 | |||||
NDB | locus_tag | CELE_C33H5.8 | |||||
Panther | gene | CAEEL|WormBase=WBGene00016375|UniProtKB=Q18405 | |||||
family | PTHR45984 | ||||||
NCBI | gene | 183187 | |||||
RefSeq | protein | NM_068881.2 | |||||
TREEFAM | TREEFAM_ID | TF317515 | |||||
TrEMBL | UniProtAcc | Q18405 | |||||
UniProt_GCRP | UniProtAcc | Q18405 | |||||
Species | Caenorhabditis elegans | ||||||
History | Version_change (2) | ||||||
Status | Live | ||||||
Gene_info | Biotype | SO:0001217 | |||||
Gene_class | rpap | ||||||
Allele (12) | |||||||
RNASeq_FPKM (74) | |||||||
Contained_in_operon | CEOP4252 | ||||||
CEOP4663 | |||||||
Ortholog (33) | |||||||
Paralog | WBGene00000500 | Caenorhabditis elegans | From_analysis | WormBase-Compara | |||
WBGene00006781 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||
WBGene00015916 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||
WBGene00019893 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||
WBGene00019983 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||
Structured_description | Automated_description | Enriched in germ line; head mesodermal cell; intestine; muscle cell; and neurons based on tiling array; RNA-seq; and microarray studies. Is affected by several genes including sir-2.1; set-2; and ain-1 based on RNA-seq and microarray studies. Is affected by eight chemicals including Zidovudine; Psoralens; and allantoin based on RNA-seq and microarray studies. Is predicted to encode a protein with the following domains: RNA-polymerase II-associated protein 3-like, C-terminal domain; Tetratricopeptide repeat; Potential Monad-binding region of RPAP3; and Tetratricopeptide-like helical domain superfamily. | Paper_evidence | WBPaper00065943 | |||
Curator_confirmed | WBPerson324 | ||||||
WBPerson37462 | |||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||
Date_last_updated | 29 Nov 2023 00:00:00 | ||||||
Molecular_info | Corresponding_CDS | C33H5.8 | |||||
Corresponding_transcript | C33H5.8.1 | ||||||
Other_sequence | CBC02458_1 | ||||||
CRC12151_1 | |||||||
Associated_feature | WBsf668053 | ||||||
WBsf230321 | |||||||
Experimental_info | RNAi_result | WBRNAi00061747 | Inferred_automatically | RNAi_primary | |||
WBRNAi00106373 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00029493 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00041820 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00011571 | Inferred_automatically | RNAi_primary | |||||
Expr_pattern | Expr1011221 | ||||||
Expr1037010 | |||||||
Expr1145834 | |||||||
Expr2001364 | |||||||
Expr2019588 | |||||||
Drives_construct | WBCnstr00028121 | ||||||
Construct_product | WBCnstr00028121 | ||||||
Microarray_results (18) | |||||||
Expression_cluster (72) | |||||||
Interaction (13) | |||||||
Map_info | Positive | Positive_clone | C33H5 | Inferred_automatically | From sequence, transcript, pseudogene data | ||
Interpolated_map_position | IV | 3.475 | |||||
Reference | WBPaper00038491 | ||||||
WBPaper00042465 | |||||||
WBPaper00055090 | |||||||
WBPaper00060878 | |||||||
Method | Gene |