WormBase Tree Display for Gene: WBGene00016478
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| WBGene00016478 | SMap | S_parent | Sequence | C36C5 | ||||||
|---|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 3 | ||||||||
| Name | CGC_name | srt-72 | Person_evidence | WBPerson655 | ||||||
| Sequence_name | C36C5.9 | |||||||||
| Molecular_name | C36C5.9 | |||||||||
| Other_name | CELE_C36C5.9 | Accession_evidence | NDB | BX284605 | ||||||
| Public_name | srt-72 | |||||||||
| DB_info | Database | AceView | gene | 5D624 | ||||||
| WormQTL | gene | WBGene00016478 | ||||||||
| WormFlux | gene | WBGene00016478 | ||||||||
| NDB | locus_tag | CELE_C36C5.9 | ||||||||
| NCBI | gene | 183265 | ||||||||
| Species | Caenorhabditis elegans | |||||||||
| History | Version_change | 1 | 28 May 2004 13:30:57 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of stlace from WS125 | |||
| 2 | 02 Dec 2004 09:41:19 | WBPerson2970 | Name_change | CGC_name | srt-72 | |||||
| 3 | 30 Oct 2015 16:50:28 | WBPerson4025 | Event | Changed_class | CDS | Pseudogene | ||||
| Status | Live | |||||||||
| Gene_info | Biotype | SO:0000336 | ||||||||
| Gene_class | srt | |||||||||
| Allele (48) | ||||||||||
| RNASeq_FPKM (74) | ||||||||||
| Ortholog | WBGene00160172 | Caenorhabditis brenneri | From_analysis | OMA | ||||||
| WBGene00163957 | Caenorhabditis brenneri | From_analysis | TreeFam | |||||||
| WBGene00193682 | Caenorhabditis brenneri | From_analysis | TreeFam | |||||||
| WBGene00123963 | Caenorhabditis japonica | From_analysis | TreeFam | |||||||
| WBGene00052547 | Caenorhabditis remanei | From_analysis | TreeFam | |||||||
| Paralog (57) | ||||||||||
| Structured_description | Automated_description | Enriched in NSM based on tiling array studies. Is affected by several genes including eat-2; tph-1; and pgl-1 based on tiling array and RNA-seq studies. Is affected by eight chemicals including methylmercuric chloride; Psoralens; and allantoin based on microarray and RNA-seq studies. | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | |||||||||
| WBPerson37462 | ||||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | |||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | |||||||||
| Molecular_info | Corresponding_CDS_history | C36C5.9:wp251 | ||||||||
| Corresponding_pseudogene | C36C5.9 | |||||||||
| Experimental_info | Expr_pattern | Expr1017937 | ||||||||
| Expr1146062 | ||||||||||
| Microarray_results (13) | ||||||||||
| Expression_cluster (30) | ||||||||||
| Interaction | WBInteraction000335711 | |||||||||
| WBInteraction000437637 | ||||||||||
| WBInteraction000446349 | ||||||||||
| Map_info | Map | V | Position | -12.7313 | Error | 0.000329 | ||||
| Positive | Positive_clone | C36C5 | Inferred_automatically | From sequence, transcript, pseudogene data | ||||||
| Pseudo_map_position | ||||||||||
| Reference | WBPaper00051780 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | ||||||||
| Method | Gene |
