WormBase Tree Display for Gene: WBGene00016517
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| WBGene00016517 | SMap | S_parent | Sequence | C38C3 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 2 | |||||||
| Name | CGC_name | nhr-260 | Person_evidence | WBPerson600 | |||||
| Sequence_name | C38C3.9 | ||||||||
| Molecular_name | C38C3.9 | ||||||||
| C38C3.9.1 | |||||||||
| CE08646 | |||||||||
| Other_name | CELE_C38C3.9 | Accession_evidence | NDB | BX284605 | |||||
| Public_name | nhr-260 | ||||||||
| DB_info | Database | AceView | gene | 5B984 | |||||
| WormQTL | gene | WBGene00016517 | |||||||
| WormFlux | gene | WBGene00016517 | |||||||
| NDB | locus_tag | CELE_C38C3.9 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00016517|UniProtKB=O17081 | |||||||
| family | PTHR46587 | ||||||||
| NCBI | gene | 183304 | |||||||
| RefSeq | protein | NM_071034.3 | |||||||
| TREEFAM | TREEFAM_ID | TF317146 | |||||||
| TrEMBL | UniProtAcc | O17081 | |||||||
| UniProt_GCRP | UniProtAcc | O17081 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 28 May 2004 13:30:57 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of stlace from WS125 | ||
| 2 | 22 Jul 2005 10:29:12 | WBPerson2970 | Name_change | CGC_name | nhr-260 | ||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | nhr | ||||||||
| Allele (30) | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00029290 | ||||||||
| 00029291 | |||||||||
| 00029292 | |||||||||
| 00122113 | |||||||||
| 00122114 | |||||||||
| 00122115 | |||||||||
| 00122116 | |||||||||
| Ortholog (44) | |||||||||
| Paralog (218) | |||||||||
| Structured_description | Automated_description | Predicted to enable DNA-binding transcription factor activity; sequence-specific DNA binding activity; and zinc ion binding activity. Predicted to be involved in regulation of DNA-templated transcription. Predicted to be located in nucleus. Expressed in seam cell. | Paper_evidence | WBPaper00065943 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | C38C3.9 | |||||||
| Corresponding_transcript | C38C3.9.1 | ||||||||
| Associated_feature | WBsf718285 | ||||||||
| WBsf999342 | |||||||||
| WBsf1019190 | |||||||||
| WBsf233336 | |||||||||
| Transcription_factor | WBTranscriptionFactor000970 | ||||||||
| Experimental_info | RNAi_result | WBRNAi00029656 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00042145 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00011747 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr7470 | ||||||||
| Expr1014598 | |||||||||
| Expr1146147 | |||||||||
| Expr2014152 | |||||||||
| Expr2032395 | |||||||||
| Drives_construct | WBCnstr00012614 | ||||||||
| Microarray_results (18) | |||||||||
| Expression_cluster (74) | |||||||||
| Interaction | WBInteraction000138784 | ||||||||
| WBInteraction000145953 | |||||||||
| WBInteraction000368998 | |||||||||
| WBInteraction000393531 | |||||||||
| WBInteraction000433990 | |||||||||
| WBInteraction000526961 | |||||||||
| Map_info | Map | V | Position | -18.6977 | Error | 0.016872 | |||
| Positive | Positive_clone | C38C3 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Mapping_data | Multi_point | 5322 | |||||||
| 4186 | |||||||||
| Pseudo_map_position | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
