WormBase Tree Display for Gene: WBGene00016561
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| WBGene00016561 | SMap | S_parent | Sequence | CHROMOSOME_I | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 3 | |||||||
| Name | CGC_name | eri-6 | Person_evidence | WBPerson545 | |||||
| Sequence_name | C41D11.1 | ||||||||
| Molecular_name (19) | |||||||||
| Other_name | CELE_C41D11.1 | Accession_evidence | NDB | BX284601 | |||||
| Public_name | eri-6 | ||||||||
| DB_info | Database | AceView | gene | 1F33 | |||||
| WormQTL | gene | WBGene00016561 | |||||||
| WormFlux | gene | WBGene00016561 | |||||||
| NDB | locus_tag | CELE_C41D11.1 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00016561|UniProtKB=G5EDX2 | |||||||
| family | PTHR31424 | ||||||||
| NCBI | gene | 172050 | |||||||
| RefSeq | protein | NM_001392152.1 | |||||||
| NM_001262696.4 | |||||||||
| NM_001262695.4 | |||||||||
| NM_001262693.4 | |||||||||
| NM_001379821.1 | |||||||||
| NM_001392154.1 | |||||||||
| TREEFAM | TREEFAM_ID | TF322826 | |||||||
| TrEMBL | UniProtAcc | G4RZ45 | |||||||
| G4RZ48 | |||||||||
| G4RZ49 | |||||||||
| G4RZ46 | |||||||||
| G5EDX2 | |||||||||
| G4RZ35 | |||||||||
| UniProt_GCRP | UniProtAcc | G5EDX2 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 28 May 2004 13:30:57 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of stlace from WS125 | ||
| 2 | 09 Jan 2009 11:25:11 | WBPerson2970 | Name_change | CGC_name | eri-6 | ||||
| Sequence_name | C41D11.1 | ||||||||
| 3 | 07 May 2009 11:37:22 | WBPerson1867 | Event | Acquires_merge | WBGene00020133 | ||||
| Acquires_merge | WBGene00020133 | ||||||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | eri | ||||||||
| Allele (250) | |||||||||
| Strain | WBStrain00037343 | ||||||||
| WBStrain00007949 | |||||||||
| RNASeq_FPKM (74) | |||||||||
| Ortholog (11) | |||||||||
| Paralog (15) | |||||||||
| Structured_description | Automated_description | Expressed in ASIL; ASIR; ASKL; ASKR; and hypodermis. Is predicted to encode a protein with the following domains: Protein of unknown function DUF1280 and Protein of unknown function (DUF1280). | Paper_evidence | WBPaper00065943 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | C41D11.1a | |||||||
| C41D11.1b | |||||||||
| C41D11.1c | |||||||||
| C41D11.1d | |||||||||
| C41D11.1e | |||||||||
| C41D11.1f | |||||||||
| Corresponding_CDS_history | C41D11.1:wp203 | ||||||||
| C41D11.1e:wp229 | |||||||||
| Corresponding_transcript | C41D11.1a.1 | ||||||||
| C41D11.1b.1 | |||||||||
| C41D11.1b.2 | |||||||||
| C41D11.1c.1 | |||||||||
| C41D11.1d.1 | |||||||||
| C41D11.1e.1 | |||||||||
| C41D11.1f.1 | |||||||||
| Other_sequence | JI229933.1 | ||||||||
| Associated_feature (19) | |||||||||
| Experimental_info | RNAi_result (13) | ||||||||
| Expr_pattern | Expr8381 | ||||||||
| Expr1022605 | |||||||||
| Expr1037100 | |||||||||
| Expr1146274 | |||||||||
| Expr2011364 | |||||||||
| Expr2029600 | |||||||||
| Drives_construct | WBCnstr00013290 | ||||||||
| WBCnstr00025353 | |||||||||
| Construct_product | WBCnstr00025353 | ||||||||
| Microarray_results (50) | |||||||||
| Expression_cluster (127) | |||||||||
| SAGE_tag | SAGE:aagttccagtacgatgt | Strand | Sense | ||||||
| Unambiguously_mapped | |||||||||
| SAGE:tggtctaacccgaagaa | Strand | Sense | |||||||
| Unambiguously_mapped | |||||||||
| Interaction | WBInteraction000340213 | ||||||||
| WBInteraction000359086 | |||||||||
| WBInteraction000381874 | |||||||||
| WBInteraction000541218 | |||||||||
| WBInteraction000542847 | |||||||||
| Map_info | Map | I | Position | -1.27867 | Error | 0.004806 | |||
| Positive | Positive_clone | C41D11 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Reference (12) | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
