WormBase Tree Display for Gene: WBGene00016597
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| WBGene00016597 | SMap | S_parent | Sequence | C42D4 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 2 | |||||||
| Name | CGC_name | clec-179 | Person_evidence | WBPerson2531 | |||||
| Sequence_name | C42D4.11 | ||||||||
| Molecular_name | C42D4.11 | ||||||||
| C42D4.11.1 | |||||||||
| CE48253 | |||||||||
| Other_name | CELE_C42D4.11 | Accession_evidence | NDB | BX284604 | |||||
| Public_name | clec-179 | ||||||||
| DB_info | Database | AceView | gene | 4H948 | |||||
| WormQTL | gene | WBGene00016597 | |||||||
| WormFlux | gene | WBGene00016597 | |||||||
| NDB | locus_tag | CELE_C42D4.11 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00016597|UniProtKB=Q18574 | |||||||
| family | PTHR23124 | ||||||||
| NCBI | gene | 183404 | |||||||
| RefSeq | protein | NM_068733.2 | |||||||
| TREEFAM | TREEFAM_ID | TF315870 | |||||||
| TrEMBL | UniProtAcc | Q18574 | |||||||
| UniProt_GCRP | UniProtAcc | Q18574 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 28 May 2004 13:30:57 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of stlace from WS125 | ||
| 2 | 09 Oct 2007 15:40:27 | WBPerson2970 | Name_change | CGC_name | clec-179 | ||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | clec | ||||||||
| Allele (22) | |||||||||
| RNASeq_FPKM (74) | |||||||||
| Ortholog (12) | |||||||||
| Paralog (126) | |||||||||
| Structured_description | Automated_description | Enriched in neurons and in male based on RNA-seq; tiling array; and single-cell RNA-seq studies. Is affected by several genes including set-2; drh-3; and let-418 based on tiling array and RNA-seq studies. Is affected by Acrylamide based on microarray studies. Is predicted to encode a protein with the following domains: C-type lectin fold; PAN-3 domain; C-type lectin-like/link domain superfamily; PAN-like domain; and C-type lectin-like. | Paper_evidence | WBPaper00065943 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | C42D4.11 | |||||||
| Corresponding_CDS_history | C42D4.11:wp237 | ||||||||
| Corresponding_transcript | C42D4.11.1 | ||||||||
| Experimental_info | RNAi_result | WBRNAi00042352 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00029747 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00011869 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr1016567 | ||||||||
| Expr1146338 | |||||||||
| Expr2010097 | |||||||||
| Expr2028340 | |||||||||
| Drives_construct | WBCnstr00027950 | ||||||||
| Construct_product | WBCnstr00027950 | ||||||||
| Microarray_results (14) | |||||||||
| Expression_cluster (29) | |||||||||
| Interaction (57) | |||||||||
| Map_info | Map | IV | Position | 3.29225 | Error | 0.000144 | |||
| Positive | Positive_clone | C42D4 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
