WormBase Tree Display for Gene: WBGene00016678

WBGene00016678 SMap: S_parent: Sequence: C45G9
  Identity: Version: 2
    Name: CGC_name: txbp-3 Person_evidence: WBPerson1777
      Sequence_name: C45G9.7
      Molecular_name: C45G9.7
        C45G9.7.1
        CE01858
        C45G9.7.2
      Other_name: CELE_C45G9.7 Accession_evidence: NDB BX284603
      Public_name: txbp-3
    DB_info: Database: AceView gene 3G136
        WormQTL gene WBGene00016678
        WormFlux gene WBGene00016678
        NDB locus_tag CELE_C45G9.7
        Panther gene CAEEL|WormBase=WBGene00016678|UniProtKB=Q09506
          family PTHR23136
        NCBI gene 175685
        RefSeq protein NM_065670.6
        SwissProt UniProtAcc Q09506
        TREEFAM TREEFAM_ID TF318964
        UniProt_GCRP UniProtAcc Q09506
    Species: Caenorhabditis elegans
    History: Version_change: 1 28 May 2004 13:30:57 WBPerson1971 Event: Imported: Initial conversion from CDS class of stlace from WS125
        2 06 Feb 2019 16:53:25 WBPerson1983 Name_change: CGC_name: txbp-3
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: txbp
    Allele (20)
    Strain: WBStrain00051491
    RNASeq_FPKM (74)
    GO_annotation: 00054389
      00054390
    Ortholog (35)
    Structured_description: Automated_description: Enriched in several structures, including excretory cell; germ line; interfacial epithelial cell; sensory neurons; and somatic gonad precursor based on tiling array; RNA-seq; and single-cell RNA-seq studies. Is affected by several genes including glp-1; daf-12; and sir-2.1 based on microarray; RNA-seq; and tiling array studies. Is affected by eleven chemicals including hydrogen sulfide; rotenone; and Alovudine based on microarray and RNA-seq studies. Is predicted to encode a protein with the following domains: PDZ superfamily; Tax1-binding protein 3; and PDZ domain. Is an ortholog of human TAX1BP3 (Tax1 binding protein 3). Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: C45G9.7
    Corresponding_transcript: C45G9.7.1
      C45G9.7.2
    Other_sequence (14)
    Associated_feature: WBsf651030
      WBsf651031
      WBsf666863
      WBsf992280
      WBsf226630
  Experimental_info: RNAi_result: WBRNAi00011994 Inferred_automatically: RNAi_primary
      WBRNAi00042556 Inferred_automatically: RNAi_primary
      WBRNAi00061754 Inferred_automatically: RNAi_primary
      WBRNAi00029843 Inferred_automatically: RNAi_primary
      WBRNAi00005869 Inferred_automatically: RNAi_primary
      WBRNAi00103215 Inferred_automatically: RNAi_primary
    Expr_pattern: Expr1021405
      Expr1037168
      Expr1146539
      Expr2001665
      Expr2019892
    Drives_construct: WBCnstr00027895
    Construct_product: WBCnstr00027895
    Microarray_results (19)
    Expression_cluster (125)
    Interaction (46)
  Map_info: Map: III Position: -2.20683
    Positive: Positive_clone: C45G9 Inferred_automatically: From sequence, transcript, pseudogene data
    Pseudo_map_position
  Reference: WBPaper00038491
    WBPaper00055090
    WBPaper00057747
  Remark: Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. CGC_data_submission
  Method: Gene