WormBase Tree Display for Gene: WBGene00016718
expand all nodes | collapse all nodes | view schema
| WBGene00016718 | SMap | S_parent | Sequence | C46F9 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 2 | |||||||
| Name | CGC_name | math-23 | Person_evidence | WBPerson655 | |||||
| Sequence_name | C46F9.2 | ||||||||
| Molecular_name | C46F9.2 | ||||||||
| C46F9.2.1 | |||||||||
| CE08769 | |||||||||
| Other_name | CELE_C46F9.2 | Accession_evidence | NDB | BX284602 | |||||
| Public_name | math-23 | ||||||||
| DB_info | Database (11) | ||||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 28 May 2004 13:30:57 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of stlace from WS125 | ||
| 2 | 12 Dec 2005 17:54:47 | WBPerson2970 | Name_change | CGC_name | math-23 | ||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | math | ||||||||
| Allele (136) | |||||||||
| RNASeq_FPKM (74) | |||||||||
| Ortholog (18) | |||||||||
| Paralog (85) | |||||||||
| Structured_description | Concise_description | The C46F9.2 gene encodes a protein closely similar to C46F9.3, which has a meprin-associated Traf homology (MATH) domain and may be involved in apoptosis. | Paper_evidence | WBPaper00004589 | |||||
| Curator_confirmed | WBPerson567 | ||||||||
| Date_last_updated | 17 Jun 2004 00:00:00 | ||||||||
| Automated_description | Is affected by several genes including lin-15B; met-2; and spr-5 based on microarray and RNA-seq studies. Is affected by four chemicals including Tunicamycin; Rifampin; and allantoin based on microarray and RNA-seq studies. Is predicted to encode a protein with the following domains: MATH/TRAF domain; MATH domain; and TRAF-like. | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | C46F9.2 | |||||||
| Corresponding_transcript | C46F9.2.1 | ||||||||
| Experimental_info | RNAi_result | WBRNAi00021930 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00042615 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00012043 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr1021033 | ||||||||
| Expr1146599 | |||||||||
| Expr2013400 | |||||||||
| Expr2031634 | |||||||||
| Drives_construct | WBCnstr00027859 | ||||||||
| Construct_product | WBCnstr00027859 | ||||||||
| Microarray_results (16) | |||||||||
| Expression_cluster (48) | |||||||||
| SAGE_tag | SAGE:aattccaaaa | Strand | Sense | ||||||
| Unambiguously_mapped | |||||||||
| SAGE:tccttccggc | Strand | Antisense | |||||||
| SAGE:ttgtacagtc | Strand | Antisense | |||||||
| SAGE:gaatggataa | Strand | Sense | |||||||
| Most_three_prime | |||||||||
| SAGE:gaatattgaa | Strand | Antisense | |||||||
| SAGE:gaaattgaaa | Strand | Sense | |||||||
| Unambiguously_mapped | |||||||||
| SAGE:gagaatgcaa | Strand | Sense | |||||||
| Unambiguously_mapped | |||||||||
| SAGE:gatttcaatt | Strand | Antisense | |||||||
| SAGE:tccttccggcttttgga | Strand | Antisense | |||||||
| Interaction | WBInteraction000451543 | ||||||||
| Map_info | Map | II | Position | -14.2051 | Error | 0.002129 | |||
| Positive | Positive_clone | C46F9 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
