WormBase Tree Display for Gene: WBGene00016735
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WBGene00016735 | SMap | S_parent | Sequence | C46H11 | |||
---|---|---|---|---|---|---|---|
Identity (6) | |||||||
Gene_info | Biotype | SO:0001217 | |||||
Gene_class | fhod | ||||||
Allele (125) | |||||||
Strain | WBStrain00003122 | ||||||
RNASeq_FPKM (74) | |||||||
GO_annotation | 00000582 | ||||||
00000583 | |||||||
00000584 | |||||||
00000585 | |||||||
00001214 | |||||||
00001215 | |||||||
00001216 | |||||||
00001217 | |||||||
Contained_in_operon | CEOP1899 | ||||||
Ortholog (44) | |||||||
Paralog | WBGene00000872 | Caenorhabditis elegans | From_analysis | WormBase-Compara | |||
WBGene00008848 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||
WBGene00018976 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||
WBGene00019030 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||
WBGene00021473 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||
WBGene00021698 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||
Structured_description | Automated_description | Predicted to enable actin filament binding activity. Involved in actin filament organization and embryonic body morphogenesis. Located in actin cytoskeleton. Expressed in muscle cell; pharyngeal muscle cell; and seam cell. Human ortholog(s) of this gene implicated in familial hypertrophic cardiomyopathy. Is an ortholog of human FHOD1 (formin homology 2 domain containing 1) and FHOD3 (formin homology 2 domain containing 3). | Paper_evidence | WBPaper00065943 | |||
Curator_confirmed | WBPerson324 | ||||||
WBPerson37462 | |||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||
Date_last_updated | 29 Nov 2023 00:00:00 | ||||||
Disease_info | Potential_model | DOID:0080326 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:26178) | ||
Molecular_info | Corresponding_CDS | C46H11.11a | |||||
C46H11.11b | |||||||
C46H11.11c | |||||||
C46H11.11d | |||||||
C46H11.11e | |||||||
C46H11.11f | |||||||
C46H11.11g | |||||||
C46H11.11h | |||||||
Corresponding_CDS_history | C46H11.11a:wp178 | ||||||
C46H11.11b:wp178 | |||||||
Corresponding_transcript | C46H11.11a.1 | ||||||
C46H11.11b.1 | |||||||
C46H11.11c.1 | |||||||
C46H11.11d.1 | |||||||
C46H11.11e.1 | |||||||
C46H11.11f.1 | |||||||
C46H11.11g.1 | |||||||
C46H11.11h.1 | |||||||
Other_sequence (53) | |||||||
Associated_feature (28) | |||||||
Experimental_info | RNAi_result | WBRNAi00117058 | Inferred_automatically | RNAi_primary | |||
WBRNAi00111040 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00022306 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00111039 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00029884 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00042624 | Inferred_automatically | RNAi_primary | |||||
Expr_pattern (12) | |||||||
Drives_construct | WBCnstr00003605 | ||||||
WBCnstr00014784 | |||||||
WBCnstr00027843 | |||||||
Construct_product | WBCnstr00014784 | ||||||
WBCnstr00027843 | |||||||
Regulate_expr_cluster | WBPaper00060634:fhod-1(tm2363)_downregulated | ||||||
WBPaper00060634:fhod-1(tm2363)_upregulated | |||||||
Antibody | WBAntibody00002372 | ||||||
WBAntibody00002509 | |||||||
WBAntibody00002510 | |||||||
Microarray_results (25) | |||||||
Expression_cluster (191) | |||||||
Interaction (48) | |||||||
Map_info | Map | I | Position | -0.421363 | Error | 0.000374 | |
Positive | Positive_clone | C46H11 | Inferred_automatically | From sequence, transcript, pseudogene data | |||
Pseudo_map_position | |||||||
Reference (23) | |||||||
Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||
Method | Gene |