WormBase Tree Display for Gene: WBGene00016837
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WBGene00016837 | SMap | S_parent | Sequence | C50F2 | |||||
---|---|---|---|---|---|---|---|---|---|
Identity | Version | 2 | |||||||
Name | CGC_name | syf-1 | |||||||
Sequence_name | C50F2.3 | ||||||||
Molecular_name | C50F2.3 | ||||||||
C50F2.3.1 | |||||||||
CE08909 | |||||||||
Other_name | phi-4 | Person_evidence | WBPerson2582 | ||||||
CELE_C50F2.3 | Accession_evidence | NDB | BX284601 | ||||||
Public_name | syf-1 | ||||||||
DB_info | Database | AceView | gene | 1E447 | |||||
WormQTL | gene | WBGene00016837 | |||||||
WormFlux | gene | WBGene00016837 | |||||||
NDB | locus_tag | CELE_C50F2.3 | |||||||
Panther | gene | CAEEL|WormBase=WBGene00016837|UniProtKB=P91175 | |||||||
family | PTHR11246 | ||||||||
NCBI | gene | 171970 | |||||||
RefSeq | protein | NM_058849.10 | |||||||
TREEFAM | TREEFAM_ID | TF300866 | |||||||
TrEMBL | UniProtAcc | P91175 | |||||||
UniProt_GCRP | UniProtAcc | P91175 | |||||||
Species | Caenorhabditis elegans | ||||||||
History | Version_change | 1 | 28 May 2004 13:30:58 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of stlace from WS125 | ||
2 | 05 Apr 2017 11:17:23 | WBPerson2970 | Name_change | CGC_name | syf-1 | ||||
Status | Live | ||||||||
Gene_info | Biotype | SO:0001217 | |||||||
Gene_class | syf | ||||||||
Allele (42) | |||||||||
Strain | WBStrain00001905 | ||||||||
WBStrain00001495 | |||||||||
WBStrain00037603 | |||||||||
RNASeq_FPKM (74) | |||||||||
GO_annotation | 00050193 | ||||||||
00050194 | |||||||||
00050195 | |||||||||
00050196 | |||||||||
00050197 | |||||||||
00050198 | |||||||||
00050199 | |||||||||
00050200 | |||||||||
00122366 | |||||||||
00122367 | |||||||||
Contained_in_operon | CEOP1128 | ||||||||
Ortholog (38) | |||||||||
Paralog | WBGene00013343 | Caenorhabditis elegans | From_analysis | Panther | |||||
WormBase-Compara | |||||||||
WBGene00019762 | Caenorhabditis elegans | From_analysis | Panther | ||||||
WormBase-Compara | |||||||||
Structured_description | Automated_description | Predicted to be involved in generation of catalytic spliceosome for first transesterification step. Predicted to be part of Prp19 complex; U2-type catalytic step 2 spliceosome; and post-mRNA release spliceosomal complex. Expressed in head and tail. Is an ortholog of human XAB2 (XPA binding protein 2). | Paper_evidence | WBPaper00065943 | |||||
Curator_confirmed | WBPerson324 | ||||||||
WBPerson37462 | |||||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
Molecular_info | Corresponding_CDS | C50F2.3 | |||||||
Corresponding_transcript | C50F2.3.1 | ||||||||
Other_sequence (75) | |||||||||
Associated_feature | WBsf643165 | ||||||||
WBsf643166 | |||||||||
WBsf656133 | |||||||||
WBsf217454 | |||||||||
Experimental_info | RNAi_result (39) | ||||||||
Expr_pattern | Chronogram839 | ||||||||
Expr5557 | |||||||||
Expr5558 | |||||||||
Expr1026971 | |||||||||
Expr1037224 | |||||||||
Expr1146897 | |||||||||
Expr2017174 | |||||||||
Expr2035310 | |||||||||
Drives_construct | WBCnstr00002352 | ||||||||
WBCnstr00004320 | |||||||||
WBCnstr00027766 | |||||||||
Construct_product | WBCnstr00027766 | ||||||||
Microarray_results (19) | |||||||||
Expression_cluster (111) | |||||||||
Interaction (204) | |||||||||
Map_info | Map | I | Position | -1.95124 | |||||
Positive | Positive_clone | C50F2 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
Pseudo_map_position | |||||||||
Reference | WBPaper00038491 | ||||||||
WBPaper00048493 | |||||||||
WBPaper00055090 | |||||||||
WBPaper00064339 | |||||||||
Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
Method | Gene |