WormBase Tree Display for Gene: WBGene00016924
expand all nodes | collapse all nodes | view schema
| WBGene00016924 | SMap | S_parent | Sequence | C54F6 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 2 | |||||||
| Name | Sequence_name | C54F6.6 | |||||||
| Molecular_name | C54F6.6 | ||||||||
| C54F6.6.1 | |||||||||
| CE52242 | |||||||||
| Other_name | CELE_C54F6.6 | Accession_evidence | NDB | BX284605 | |||||
| Public_name | C54F6.6 | ||||||||
| DB_info | Database | AceView | gene | 5I1 | |||||
| WormQTL | gene | WBGene00016924 | |||||||
| WormFlux | gene | WBGene00016924 | |||||||
| NDB | locus_tag | CELE_C54F6.6 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00016924|UniProtKB=O16446 | |||||||
| family | PTHR36515 | ||||||||
| NCBI | gene | 34700616 | |||||||
| RefSeq | protein | NM_001356696.3 | |||||||
| TrEMBL | UniProtAcc | O16446 | |||||||
| UniProt_GCRP | UniProtAcc | O16446 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 28 May 2004 13:30:58 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of stlace from WS125 | ||
| 2 | 21 Sep 2017 14:34:34 | WBPerson4025 | Event | Split_into | WBGene00271796 | ||||
| Split_into | WBGene00271796 | ||||||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Allele | WBVar01025424 | ||||||||
| WBVar01499740 | |||||||||
| WBVar01500129 | |||||||||
| WBVar00462774 | |||||||||
| WBVar01499056 | |||||||||
| WBVar00587780 | |||||||||
| WBVar01498573 | |||||||||
| WBVar01499496 | |||||||||
| WBVar01499316 | |||||||||
| WBVar01500066 | |||||||||
| RNASeq_FPKM (74) | |||||||||
| Ortholog | WBGene00107817 | Pristionchus pacificus | From_analysis | OMA | |||||
| WBGene00024142 | Caenorhabditis briggsae | From_analysis | OrthoMCL | ||||||
| Inparanoid_8 | |||||||||
| WBGene00024143 | Caenorhabditis briggsae | From_analysis | OrthoMCL | ||||||
| Inparanoid_8 | |||||||||
| chrV_pilon.g14738 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| Paralog | WBGene00044113 | Caenorhabditis elegans | From_analysis | Inparanoid_8 | |||||
| Panther | |||||||||
| WormBase-Compara | |||||||||
| WBGene00235092 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WBGene00202498 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| WBGene00235093 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WBGene00271832 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| Structured_description | Automated_description | Enriched in AMshL; AMshR; and amphid sheath cell based on RNA-seq and single-cell RNA-seq studies. Is affected by several genes including daf-2; age-1; and eat-2 based on microarray and RNA-seq studies. Is affected by eight chemicals including tryptophan; multi-walled carbon nanotube; and Sodium Chloride based on microarray and RNA-seq studies. | Paper_evidence | WBPaper00065943 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | C54F6.6 | |||||||
| Corresponding_CDS_history | C54F6.6:wp154 | ||||||||
| C54F6.6:wp216 | |||||||||
| C54F6.6:wp261 | |||||||||
| Corresponding_transcript | C54F6.6.1 | ||||||||
| Associated_feature | WBsf981959 | ||||||||
| WBsf231991 | |||||||||
| Experimental_info | Expr_pattern | Expr1016663 | |||||||
| Expr1147146 | |||||||||
| Expr2001931 | |||||||||
| Expr2020154 | |||||||||
| Drives_construct | WBCnstr00027703 | ||||||||
| Construct_product | WBCnstr00027703 | ||||||||
| Microarray_results | 184173_at | ||||||||
| Aff_C54F6.6 | |||||||||
| Expression_cluster (82) | |||||||||
| Interaction | WBInteraction000207786 | ||||||||
| WBInteraction000241818 | |||||||||
| WBInteraction000385480 | |||||||||
| WBInteraction000456575 | |||||||||
| Map_info | Positive | Positive_clone | C54F6 | Inferred_automatically | From sequence, transcript, pseudogene data | ||||
| Interpolated_map_position | V | 0.769268 | |||||||
| Method | Gene |
