WormBase Tree Display for Gene: WBGene00016927
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WBGene00016927 | SMap | S_parent | Sequence | C54F6 | |||||
---|---|---|---|---|---|---|---|---|---|
Identity | Version | 2 | |||||||
Name | CGC_name | nhr-172 | Person_evidence | WBPerson600 | |||||
Sequence_name | C54F6.9 | ||||||||
Molecular_name | C54F6.9 | ||||||||
C54F6.9.1 | |||||||||
CE42308 | |||||||||
C54F6.9.2 | |||||||||
Other_name | CELE_C54F6.9 | Accession_evidence | NDB | BX284605 | |||||
Public_name | nhr-172 | ||||||||
DB_info | Database | AceView | gene | 5H989 | |||||
WormQTL | gene | WBGene00016927 | |||||||
WormFlux | gene | WBGene00016927 | |||||||
NDB | locus_tag | CELE_C54F6.9 | |||||||
Panther | gene | CAEEL|WormBase=WBGene00016927|UniProtKB=O16442 | |||||||
family | PTHR45886 | ||||||||
NCBI | gene | 183808 | |||||||
RefSeq | protein | NM_072532.5 | |||||||
TREEFAM | TREEFAM_ID | TF315970 | |||||||
TrEMBL | UniProtAcc | O16442 | |||||||
UniProt_GCRP | UniProtAcc | O16442 | |||||||
Species | Caenorhabditis elegans | ||||||||
History | Version_change | 1 | 28 May 2004 13:30:58 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of stlace from WS125 | ||
2 | 22 Jul 2005 10:29:12 | WBPerson2970 | Name_change | CGC_name | nhr-172 | ||||
Status | Live | ||||||||
Gene_info | Biotype | SO:0001217 | |||||||
Gene_class | nhr | ||||||||
Allele (25) | |||||||||
RNASeq_FPKM (74) | |||||||||
GO_annotation | 00028049 | ||||||||
00028050 | |||||||||
00028051 | |||||||||
00122433 | |||||||||
00122434 | |||||||||
00122435 | |||||||||
00122436 | |||||||||
Ortholog (36) | |||||||||
Paralog (218) | |||||||||
Structured_description | Automated_description | Predicted to enable DNA-binding transcription factor activity; sequence-specific DNA binding activity; and zinc ion binding activity. Predicted to be involved in regulation of DNA-templated transcription. Predicted to be located in nucleus. | Paper_evidence | WBPaper00065943 | |||||
Curator_confirmed | WBPerson324 | ||||||||
WBPerson37462 | |||||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
Molecular_info | Corresponding_CDS | C54F6.9 | |||||||
Corresponding_CDS_history | C54F6.9:wp188 | ||||||||
Corresponding_transcript | C54F6.9.1 | ||||||||
C54F6.9.2 | |||||||||
Associated_feature | WBsf978806 | ||||||||
WBsf1000468 | |||||||||
WBsf1019918 | |||||||||
Transcription_factor | WBTranscriptionFactor000885 | ||||||||
Experimental_info | RNAi_result | WBRNAi00004026 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00012400 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00016625 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00065088 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00065087 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00043171 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00012408 | Inferred_automatically | RNAi_primary | |||||||
Expr_pattern | Expr1012194 | ||||||||
Expr1037262 | |||||||||
Expr1147149 | |||||||||
Expr2014073 | |||||||||
Expr2032313 | |||||||||
Drives_construct | WBCnstr00027700 | ||||||||
Construct_product | WBCnstr00027700 | ||||||||
Microarray_results (19) | |||||||||
Expression_cluster (101) | |||||||||
Interaction (25) | |||||||||
Map_info | Map | V | Position | 0.759704 | Error | 0.002485 | |||
Positive | Positive_clone | C54F6 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
Mapping_data | Multi_point | 5336 | |||||||
5350 | |||||||||
4709 | |||||||||
Pseudo_map_position | |||||||||
Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
Method | Gene |