WormBase Tree Display for Gene: WBGene00017088
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| WBGene00017088 | SMap | S_parent | Sequence | E01A2 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 2 | |||||||
| Name | CGC_name | akir-1 | Paper_evidence | WBPaper00041934 | |||||
| Person_evidence | WBPerson3907 | ||||||||
| Sequence_name | E01A2.6 | ||||||||
| Molecular_name | E01A2.6 | ||||||||
| E01A2.6.1 | |||||||||
| CE24873 | |||||||||
| Other_name | CELE_E01A2.6 | Accession_evidence | NDB | BX284601 | |||||
| Public_name | akir-1 | ||||||||
| DB_info | Database | AceView | gene | 1E706 | |||||
| WormQTL | gene | WBGene00017088 | |||||||
| WormFlux | gene | WBGene00017088 | |||||||
| NDB | locus_tag | CELE_E01A2.6 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00017088|UniProtKB=Q966L3 | |||||||
| family | PTHR13293 | ||||||||
| NCBI | gene | 171997 | |||||||
| RefSeq | protein | NM_058903.9 | |||||||
| SwissProt | UniProtAcc | Q966L3 | |||||||
| TREEFAM | TREEFAM_ID | TF317123 | |||||||
| UniProt_GCRP | UniProtAcc | Q966L3 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 28 May 2004 13:30:58 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of stlace from WS125 | ||
| 2 | 01 Feb 2013 15:22:59 | WBPerson2970 | Name_change | CGC_name | akir-1 | ||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | akir | ||||||||
| Allele (33) | |||||||||
| Strain | WBStrain00036286 | ||||||||
| WBStrain00051037 | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation (15) | |||||||||
| Contained_in_operon | CEOP1892 | ||||||||
| Ortholog (35) | |||||||||
| Structured_description | Automated_description | Predicted to enable transcription coregulator activity. Involved in meiotic sister chromatid cohesion and protein import into nucleus. Located in nucleus. Expressed in hyp7 syncytium and tail neurons. Is an ortholog of human AKIRIN2 (akirin 2). | Paper_evidence | WBPaper00065943 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | E01A2.6 | |||||||
| Corresponding_transcript | E01A2.6.1 | ||||||||
| Other_sequence (35) | |||||||||
| Associated_feature | WBsf649077 | ||||||||
| WBsf664124 | |||||||||
| WBsf983342 | |||||||||
| WBsf219240 | |||||||||
| WBsf219241 | |||||||||
| WBsf219242 | |||||||||
| Experimental_info | RNAi_result | WBRNAi00000459 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00117066 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00043560 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00110964 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00030448 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00114895 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00114899 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr5639 | ||||||||
| Expr13833 | |||||||||
| Expr13834 | |||||||||
| Expr1023682 | |||||||||
| Expr1037346 | |||||||||
| Expr1147554 | |||||||||
| Expr2009282 | |||||||||
| Expr2027519 | |||||||||
| Drives_construct | WBCnstr00003889 | ||||||||
| WBCnstr00027578 | |||||||||
| WBCnstr00040009 | |||||||||
| WBCnstr00040185 | |||||||||
| Construct_product | WBCnstr00027578 | ||||||||
| WBCnstr00040009 | |||||||||
| WBCnstr00040422 | |||||||||
| WBCnstr00040423 | |||||||||
| Regulate_expr_cluster | WBPaper00054913:AKIR-1_interacting_protein | ||||||||
| Microarray_results (19) | |||||||||
| Expression_cluster (94) | |||||||||
| Interaction (197) | |||||||||
| Map_info | Map | I | Position | -1.70086 | |||||
| Positive | Positive_clone | E01A2 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00038491 | ||||||||
| WBPaper00055090 | |||||||||
| WBPaper00055964 | |||||||||
| WBPaper00058910 | |||||||||
| WBPaper00064339 | |||||||||
| WBPaper00066060 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
