WormBase Tree Display for Gene: WBGene00017375
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| WBGene00017375 | SMap | S_parent | Sequence | CHROMOSOME_X | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 3 | |||||||
| Name | CGC_name | pbo-6 | Paper_evidence | WBPaper00031426 | |||||
| Person_evidence | WBPerson655 | ||||||||
| Sequence_name | F11C7.1 | ||||||||
| Molecular_name | F11C7.1 | ||||||||
| F11C7.1.1 | |||||||||
| CE42343 | |||||||||
| Other_name | lgc-3 | Paper_evidence | WBPaper00029376 | ||||||
| Person_evidence | WBPerson1430 | ||||||||
| CELE_F11C7.1 | Accession_evidence | NDB | BX284606 | ||||||
| Public_name | pbo-6 | ||||||||
| DB_info | Database | AceView | gene | XS45 | |||||
| WormQTL | gene | WBGene00017375 | |||||||
| NDB | locus_tag | CELE_F11C7.1 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00017375|UniProtKB=Q19351 | |||||||
| family | PTHR18945 | ||||||||
| NCBI | gene | 24104421 | |||||||
| RefSeq | protein | NM_001307904.3 | |||||||
| SwissProt | UniProtAcc | Q19351 | |||||||
| UniProt_GCRP | UniProtAcc | Q19351 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 28 May 2004 13:30:58 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of stlace from WS125 | ||
| 2 | 18 May 2007 16:58:23 | WBPerson2970 | Name_change | CGC_name | lgc-3 | ||||
| 3 | 01 Feb 2008 15:08:59 | WBPerson2970 | Event | Acquires_merge | WBGene00003945 | ||||
| Name_change | CGC_name | pbo-6 | |||||||
| Other_name | lgc-3 | ||||||||
| Acquires_merge | WBGene00003945 | ||||||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | pbo | ||||||||
| Allele (62) | |||||||||
| Legacy_information | [C.elegansII] sa243 : pBoc step of defecation motor program completely absent, other aspects of motor program and timing normal; apparently normal feeding. NA1. [JT] | ||||||||
| Strain | WBStrain00032077 | ||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation (14) | |||||||||
| Ortholog (28) | |||||||||
| Paralog (100) | |||||||||
| Structured_description | Concise_description | pbo-6/lgc-3 encodes a proton-gated ion channel which has no known function, but that is thought to form functional heterodimers with PBO-5/LGC-2; PBO-6 has no obvious non-nematode orthologs, but is paralogous to PBO-5; while heterologous PBO-6 has no activity when expressed in Xenopus oocytes, it produces strong currents when coexpressed with PBO-5 and stimulated by pH 6.0; PBO-6 is expressed in the most posterior bodywall muscles; unlike pbo-5 mutants, pbo-6(ok1564) mutants and pbo-6(RNAi) animals have no obvious phenotypes. | Paper_evidence | WBPaper00001256 | |||||
| WBPaper00031426 | |||||||||
| Curator_confirmed | WBPerson567 | ||||||||
| Date_last_updated | 05 Feb 2008 00:00:00 | ||||||||
| Automated_description | Enables extracellular ligand-gated monoatomic ion channel activity. Predicted to be involved in monoatomic ion transmembrane transport. Predicted to be located in neuron projection and synapse. Expressed in body wall musculature. | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | F11C7.1 | |||||||
| Corresponding_CDS_history | F11C7.1:wp176 | ||||||||
| F11C7.1:wp188 | |||||||||
| Corresponding_transcript | F11C7.1.1 | ||||||||
| Other_sequence | SC00029 | ||||||||
| Acan_isotig15620 | |||||||||
| GR977442.1 | |||||||||
| Associated_feature | WBsf648876 | ||||||||
| WBsf648877 | |||||||||
| WBsf663745 | |||||||||
| WBsf1008908 | |||||||||
| WBsf1008909 | |||||||||
| WBsf1008910 | |||||||||
| WBsf1008911 | |||||||||
| WBsf1025024 | |||||||||
| Experimental_info | RNAi_result | WBRNAi00066373 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00013118 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00090046 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00089820 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00089886 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00090204 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00044369 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00102745 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr9629 | ||||||||
| Expr1018257 | |||||||||
| Expr1148312 | |||||||||
| Expr2014763 | |||||||||
| Expr2032997 | |||||||||
| Drives_construct | WBCnstr00014190 | ||||||||
| WBCnstr00037833 | |||||||||
| Construct_product | WBCnstr00037833 | ||||||||
| Microarray_results (20) | |||||||||
| Expression_cluster (78) | |||||||||
| Interaction (14) | |||||||||
| Map_info | Map | X | Position | 24.0979 | Error | 0.002696 | |||
| Positive | Positive_clone | F11C7 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00016615 | ||||||||
| WBPaper00024530 | |||||||||
| WBPaper00029012 | |||||||||
| WBPaper00031246 | |||||||||
| WBPaper00031426 | |||||||||
| WBPaper00038491 | |||||||||
| WBPaper00042472 | |||||||||
| WBPaper00055090 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
