WormBase Tree Display for Gene: WBGene00017400
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| WBGene00017400 | SMap | S_parent | Sequence | F12D9 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 2 | |||||||
| Name | CGC_name | stg-2 | Person_evidence | WBPerson404 | |||||
| Sequence_name | F12D9.1 | ||||||||
| Molecular_name | F12D9.1 | ||||||||
| F12D9.1.1 | |||||||||
| CE44846 | |||||||||
| Other_name | CELE_F12D9.1 | Accession_evidence | NDB | BX284606 | |||||
| Public_name | stg-2 | ||||||||
| DB_info | Database | AceView | gene | XJ260 | |||||
| WormQTL | gene | WBGene00017400 | |||||||
| WormFlux | gene | WBGene00017400 | |||||||
| NDB | locus_tag | CELE_F12D9.1 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00017400|UniProtKB=H2KZQ4 | |||||||
| family | PTHR12107 | ||||||||
| NCBI | gene | 184378 | |||||||
| RefSeq | protein | NM_001029385.5 | |||||||
| TrEMBL | UniProtAcc | G5EBI8 | |||||||
| UniProt_GCRP | UniProtAcc | G5EBI8 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 28 May 2004 13:30:58 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of stlace from WS125 | ||
| 2 | 09 Jan 2009 11:30:09 | WBPerson2970 | Name_change | CGC_name | stg-2 | ||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | stg | ||||||||
| Allele (100) | |||||||||
| Strain | WBStrain00032855 | ||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation (13) | |||||||||
| Ortholog (28) | |||||||||
| Paralog | WBGene00007670 | Caenorhabditis elegans | From_analysis | Panther | |||||
| WormBase-Compara | |||||||||
| Structured_description | Concise_description | stg-2 encodes, along with stg-1, one of two C. elegans TARPs (transmembrane AMPAR regulatory protein). | Paper_evidence | WBPaper00032216 | |||||
| Curator_confirmed | WBPerson1843 | ||||||||
| Date_last_updated | 13 Oct 2012 00:00:00 | ||||||||
| Automated_description | Predicted to enable channel regulator activity and voltage-gated calcium channel activity. Involved in adult locomotory behavior and positive regulation of glutamatergic synaptic transmission. Predicted to be located in postsynaptic density membrane. Predicted to be part of AMPA glutamate receptor complex. | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | F12D9.1 | |||||||
| Corresponding_CDS_history | F12D9.1a:wp271 | ||||||||
| Corresponding_transcript | F12D9.1.1 | ||||||||
| Other_sequence (11) | |||||||||
| Associated_feature | WBsf1006211 | ||||||||
| WBsf1006212 | |||||||||
| WBsf1023448 | |||||||||
| Experimental_info | RNAi_result | WBRNAi00030852 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00044433 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr9658 | ||||||||
| Expr1028750 | |||||||||
| Expr1148379 | |||||||||
| Expr2016961 | |||||||||
| Expr2035109 | |||||||||
| Drives_construct | WBCnstr00014207 | ||||||||
| Construct_product | WBCnstr00018417 | ||||||||
| Microarray_results (18) | |||||||||
| Expression_cluster (133) | |||||||||
| Interaction (15) | |||||||||
| Map_info | Map | X | Position | 0.1746 | Error | 0.008117 | |||
| Positive | Positive_clone | F12D9 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00032216 | ||||||||
| WBPaper00041519 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
